Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0940 ATGGCTGACATGGATCGCGCTTCTGATGATGTTTCTGCAGATTCTACAGAGCAAACCGGTCAAGCTTCCAAGGCTGAGTTTTCTGAAGATGAGGAAACCCTTATAACCAGGATGTATAATCTGGTTGGGGAGAGGTGGTCTTTGATTGCTGGAAGAATCCCTGGAAGAACAGCAGAAGAAATAGAGAAGTTCTGGACTTCAAGATGCTCAACCAGTCATCAGAAAATGATATCACCCAGTTTCATTCACTCCTAG 255 0.4431 MADMDRASDDVSADSTEQTGQASKAEFSEDEETLITRMYNLVGERWSLIAGRIPGRTAEEIEKFWTSRCSTSHQKMISPSFIHS 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0940 84 MobiDBLite consensus disorder prediction 1 29 - -
Lele30g0940 84 FunFam MYB-like transcription factor 26 68 - -
Lele30g0940 84 Pfam Myb-like DNA-binding domain 26 66 IPR001005 -
Lele30g0940 84 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 23 74 - -
Lele30g0940 84 SMART sant 23 71 IPR001005 -
Lele30g0940 84 CDD SANT 26 65 IPR001005 -
Lele30g0940 84 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 73 IPR017930 -
Lele30g0940 84 Gene3D - 26 81 - -
Lele30g0940 84 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Lele30g0940 84 SUPERFAMILY Homeodomain-like 24 69 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0940 Lele-ChrLele30 13075023 13075635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0940 21 70 MYB Transcription Factor Family AT5G14750 44.000 1.01e-13 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele30g0940 Myb_DNA-binding 3.1e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0940 30 13075023 13075635 Lele31g1082 31 17634502 17635100 hybridization
Lele30g0940 30 13075023 13075635 Lele32g0443 32 2798656 2800814 hybridization