Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0916 ATGAGGAACACAAGGAAGATAATGCTCAACCGGTCTGCAAGTCACATGCTGCCAGTATTCTTTATGCATGCATTGTTTTTCACTTTTATGCATTGCTCTGCTAGGGATGCCATAAGCATTAACAATTTCTTAAGTGATAGGGAAGGGGATGCTCTTATTTCCGCTGGAGAAAGATTTGAACTTGGATTCTTTACCCCAAATGGAAGCTCTGGTAGTGGAAGATATGTGGGAATATGGTACTACAAGTCAAATCCGCCTACAGTTGTGTGGGTTGCTAACAGAGACAATCCACTTTCTGATGCTGGGGGTGTTCTTGCAATATCTGAGGTTGGCAATCTCAGAGTTTTGGATGGAAGTGGGAAATCTTACTGGGGTACAAATCTTGAGATGCCATCTTCAGCGCACAGGACGGTTAAGCTAATGGATAGTGGAAATCTTATTATAAGCGATGAAGAACAAGGAAGTCACTCAGTGAAAATTGTCTGGCAGAGTTTTGCAAATCCAACTGATACATTTCTCCCAGGCATGAAAATGGATGAAAATTTGGTGCTAACTTCTTGGAGAATTCATGATGATCCGGCGCCAGGGAACTTCTCATTTCGGCAAGATCAAGGAGAGAACCAATATATCATATGGAAAAGATCTATCAGGTATTGGAAAAGCAGTGCGACAGGTACATTTTTTGGGTCAGGTGAAATATCTTCCGTAATATCTTACTTATTGTCGAATTTCACCCAGAGAATATCTCCAAATAACTCTGTACCCGTTCTTACTTCATCTCTGTATGCCGACACAAGGCTGGTTATGACATACTCTGGTCAGCTTCAGTATTTGAAGATGGATTCACAAAAAGTTTGGTACTTGGTTTGGGCAGAGCCACGAGATAGATGCAGCGTGTATAATGCTTGTGGTAACTTTGGCAGCTGCAATAGTAAGTACGATTTTATGTGCAAATGTTTACCTGGGTTCACGCCTAACTCTCCGGAAAGTTGGGATTCCGGCGACTTCTCAGGTGGATGCAGAAGGAAAACAAATGTGTGCAGAGAGAACGCTGAGAGTGACACGTTTTTGAGTTTAAAAATTATGAAAGTAGGAAGCCCGGATGCTCAATTTAATGCTAAGAATGAAGGGGAATGTAAGTTAGAATGCCTTAACAATTGCCAGTGCTATGCATATTCATATCAAGATCCTAAAATCACAAGGCGGGCTGCTAGTGGTGACGCAGTGTGCTGGATTTGGACTGAAGACTTGAACAATCTTCAAGAGGAGTATGAGAATGGATGTGATCTCAATGTACGCGTGGCATATTATGATATAGCATCCAATTGCAGGACCTGTAGGACATGTGGCACAAACTTTATTCCATATCCACTTAGCACAGGACCACGTTGTGGCGATCCCATGTACTTTAGTTTTCACTGTAACTTCACTACAGGAGAACTTAACTTTGAAACTCCTGGGGGAACTTATCAAGTGATAAGCATAACACCTGAAACGCAAAAATTCATGATCCACGGCAGAGACATAGTTGATTGTAAGGGTCAAAGTTTGACGGACAAGCTTCTGCATTTAAACCAGTCATCTCCATTTCATCTCACTGGTTGGTGCAATGCTGACCCAGGCACCTTTAATCCTATTGCTCCTGCGAAACTTGGTGGGGAAATAGAAATGAGCTGGGATCCACCATTGGAGCCACATTGTCGGTTTCTTTCAGACTGTAAGGACTGGCCAAACTCAATTTGCAATACTTCCAGAGACGGGCAAAAGAGATGTCTTTGCAAAACAAATTTTCTATGGGGTGGCTTGAGTTTAAATTGTACCATTGATGGCAGCCGTAGCAATCAAACAGGCAGGCGTTTGTCTGTTCCTTTGATTATTGCAGTCACTTTCATTATTGTGATTGTGTTAATTCTTCTATCAAGTACCGTTACCTATGTTTACTTTTGGAAGAGAAGGCTGATCAAGACAAAAGAAATTATGGGGTATGTTAAGAAAAATTCAGCGAGGAGCCTGTATGACAGTGGATATGTCAAAGATTTGATTGAATCGGGTAGGTTGAAAGAAGATGATGGGCATTCCATAGATATCCCACATTTTCATTTGGAAAGCATACTTGATGCTACCAATAAGTTTTCAAACGCAAACAAGCTTGGACAAGGAGGATTTGGTCCTGTCTATAAGGGAAAGTTTCCAGGAGGACAAGAGATAGCAGTAAAGAGACTCTCGAGTTGCTCTGGGCAAGGTTTAGAAGAATTCAAAAATGAAGTGGTATTGATTGCCAAGCTTCAACATCGAAACTTGGTTAGGCTTCTCGGTTATTGTGTTGAAGGAGATGAAAAAATGTTAGTGTATGAATATATGCCGAATAGGAGTCTAGATTCTTTCATATTTGACTTGAAGTCATCTGTCCTATTAGATTGGGGCAAGCGTTTTAAGATTATTTTGGGGATTGCTCGAGGGCTTCTTTACCTTCATCAAGACTCAAGGTTAAGAATTATTCATAGAGACTTAAAAACAAGCAATATTCTACTAGATGAAGAGATGAGCCCTAAAATCTCAGATTTTGGCTTAGCTAGGATCTTTGGAGGAAAAGAAACTGCAACAAACACAAACAGAGTGGTTGGAACTTATGGCTATATGTCTCCAGAATATGCTTTAGACGGATTTTTTTCAGTCAAGTCTGATGTGTTTAGCTTCGGTGTGGTGGTGCTTGAGATTCTTAGTGGAAAAAGGAACATGGGATTTTACCAGGCAGATCATGAATTGAGTCTTTTAGGCTATGCGTGGCATTTATGGAAAGTAGAGAGAGCACTGGATTTTATGGATCAGACCCTATCTAAGACTTGTAAGATAGATGAATATTTGAAGTGTGTAAATGTTGGGCTGTTATGCGTACAGGAAGATCCAAATGATCGTCCCACCATGTCCAGTGTAGTTTTCATGGTTGGAAGTGATTCCAGTACTCTTCCAACTCCCAAGCAGCCAGCTTTTGTTCTTAGAAGATGCCCTTCTAGCAGAGCTTCTACTACCAGTAAACTGGAATCTTGTTCTCATAATGAATTGACTGTCACTTTAGAAAACGGAAGGACTTGTGATTTGTCTGTAATTAAGATGGCTTTGACCAAGCAGAATGAGGAAGGTGGGAAGAAAACAATGGAGGCCATTAAGAGAGATTGGAAAGCCAAGCTAAAAAAAAGAGCGTCATCGCCAATGGCGGGGAAGCTTGGGTTTGAGGACTTGCTGCCTGTGATGGCTAATAAACTTGGAGGAGAGGGTCTGATAAAGGAGCTGTGTAATGGGTTTGAGTTGCTGATGGACAAAGAGAAAGGGGTCATCACTTTGGATAGCTTGAGGAGAAACTCTGCTCTTCTGGGTCTGCAGGACTTGAAGGAGGATGAGCTCGTGAGCATGATGAAGGAAGGCGATCTCGACGGCGACGGTGCTCTCTCTCAGATGGAGTTCTGCGTTCTCATGTTCAGATTAAGCCCTGATTTGATGGATCAATCTTGGGTTTTGCTCCAAGATGAACTCGATCATCTCGCTTCCAAATGA 3552 0.4172 MRNTRKIMLNRSASHMLPVFFMHALFFTFMHCSARDAISINNFLSDREGDALISAGERFELGFFTPNGSSGSGRYVGIWYYKSNPPTVVWVANRDNPLSDAGGVLAISEVGNLRVLDGSGKSYWGTNLEMPSSAHRTVKLMDSGNLIISDEEQGSHSVKIVWQSFANPTDTFLPGMKMDENLVLTSWRIHDDPAPGNFSFRQDQGENQYIIWKRSIRYWKSSATGTFFGSGEISSVISYLLSNFTQRISPNNSVPVLTSSLYADTRLVMTYSGQLQYLKMDSQKVWYLVWAEPRDRCSVYNACGNFGSCNSKYDFMCKCLPGFTPNSPESWDSGDFSGGCRRKTNVCRENAESDTFLSLKIMKVGSPDAQFNAKNEGECKLECLNNCQCYAYSYQDPKITRRAASGDAVCWIWTEDLNNLQEEYENGCDLNVRVAYYDIASNCRTCRTCGTNFIPYPLSTGPRCGDPMYFSFHCNFTTGELNFETPGGTYQVISITPETQKFMIHGRDIVDCKGQSLTDKLLHLNQSSPFHLTGWCNADPGTFNPIAPAKLGGEIEMSWDPPLEPHCRFLSDCKDWPNSICNTSRDGQKRCLCKTNFLWGGLSLNCTIDGSRSNQTGRRLSVPLIIAVTFIIVIVLILLSSTVTYVYFWKRRLIKTKEIMGYVKKNSARSLYDSGYVKDLIESGRLKEDDGHSIDIPHFHLESILDATNKFSNANKLGQGGFGPVYKGKFPGGQEIAVKRLSSCSGQGLEEFKNEVVLIAKLQHRNLVRLLGYCVEGDEKMLVYEYMPNRSLDSFIFDLKSSVLLDWGKRFKIILGIARGLLYLHQDSRLRIIHRDLKTSNILLDEEMSPKISDFGLARIFGGKETATNTNRVVGTYGYMSPEYALDGFFSVKSDVFSFGVVVLEILSGKRNMGFYQADHELSLLGYAWHLWKVERALDFMDQTLSKTCKIDEYLKCVNVGLLCVQEDPNDRPTMSSVVFMVGSDSSTLPTPKQPAFVLRRCPSSRASTTSKLESCSHNELTVTLENGRTCDLSVIKMALTKQNEEGGKKTMEAIKRDWKAKLKKRASSPMAGKLGFEDLLPVMANKLGGEGLIKELCNGFELLMDKEKGVITLDSLRRNSALLGLQDLKEDELVSMMKEGDLDGDGALSQMEFCVLMFRLSPDLMDQSWVLLQDELDHLASK 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0916 1183 ProSitePatterns Serine/Threonine protein kinases active-site signature. 832 844 IPR008271 GO:0004672|GO:0006468
Lele30g0916 1183 SUPERFAMILY alpha-D-mannose-specific plant lectins 88 190 IPR036426 -
Lele30g0916 1183 ProSiteProfiles EF-hand calcium-binding domain profile. 1129 1164 IPR002048 GO:0005509
Lele30g0916 1183 SMART blect_4 43 168 IPR001480 -
Lele30g0916 1183 Gene3D Phosphorylase Kinase; domain 1 677 786 - -
Lele30g0916 1183 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 30 165 - -
Lele30g0916 1183 CDD PAN_AP_plant 347 435 - -
Lele30g0916 1183 Pfam S-locus glycoprotein domain 226 326 IPR000858 GO:0048544
Lele30g0916 1183 SMART ntp_6 351 434 IPR003609 -
Lele30g0916 1183 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 133 1012 - -
Lele30g0916 1183 ProSiteProfiles EGF-like domain profile. 293 329 IPR000742 -
Lele30g0916 1183 SUPERFAMILY EF-hand 1072 1165 IPR011992 -
Lele30g0916 1183 ProSiteProfiles PAN/Apple domain profile. 347 428 IPR003609 -
Lele30g0916 1183 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 676 786 - -
Lele30g0916 1183 Pfam Protein tyrosine and serine/threonine kinase 714 979 IPR001245 GO:0004672|GO:0006468
Lele30g0916 1183 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 787 990 - -
Lele30g0916 1183 SMART serkin_6 711 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele30g0916 1183 Gene3D Transferase(Phosphotransferase) domain 1 787 989 - -
Lele30g0916 1183 CDD STKc_IRAK 717 982 - -
Lele30g0916 1183 ProSiteProfiles Protein kinase domain profile. 711 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele30g0916 1183 CDD B_lectin 41 168 IPR001480 -
Lele30g0916 1183 SUPERFAMILY Protein kinase-like (PK-like) 693 1005 IPR011009 -
Lele30g0916 1183 ProSitePatterns EF-hand calcium-binding domain. 1142 1154 IPR018247 -
Lele30g0916 1183 Pfam D-mannose binding lectin 87 182 IPR001480 -
Lele30g0916 1183 ProSiteProfiles Bulb-type lectin domain profile. 37 161 IPR001480 -
Lele30g0916 1183 Gene3D - 31 168 IPR036426 -
Lele30g0916 1183 Pfam Domain of unknown function (DUF3403) 984 1029 IPR021820 GO:0004674
Lele30g0916 1183 Gene3D - 1075 1181 - -
Lele30g0916 1183 Pfam EF-hand domain pair 1108 1160 IPR002048 GO:0005509
Lele30g0916 1183 Pfam PAN-like domain 350 419 IPR003609 -
Lele30g0916 1183 SMART efh_1 1133 1161 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0916 Lele-ChrLele30 12954338 12962734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0916 690 997 Receptor kinase-like Gene Family AT4G23230 60.000 6.40e-124 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lele30g0916 PK_Tyr_Ser-Thr 4.6e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0916 30 12954338 12962734 Lele09g0891 09 7320297 7323683 CCT
Lele30g0916 30 12954338 12962734 Lele10g0821 10 6646597 6649745 CCT
Lele30g0916 30 12954338 12962734 Lele11g0898 11 9179746 9182452 CCT
Lele30g0916 30 12954338 12962734 Lele12g0434 12 12111382 12113790 CCT
Lele30g0916 30 12954338 12962734 Lele32g0466 32 2918793 2927104 hybridization