Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0913 ATGAAGAACTGCGAGCTGTGCAGGACTCCGGCGAGAACCTACTGTGAATCGGACCAGGCTAGTTTATGTTGGGACTGCGACGCCAAGGTTCACGGAGCTAATTTCTTGGTTGCCCGGCATTCCAGGACCCTTCTATGTCATGCGTGCCAGTCTCCAACGCCATGGAAAGCCTCCGGTGCTGTTCTCGGAAACACCGTTTCGGTTTGCCGGAACTGTGACGGAGGGGTAAACTTAAGCGGTGAGGACGGCGAGGAAAGCGAAGGTGGCAATGACAACGAAATAAACTCGGAAGACGATGACGACGAGGCCATGCTCGGCGAAAACAACGACGATAACGCCGACGGCGATGAGGGAGGCTTGGATGTGGAGGCAGATCATCAAATAGTCCCTTGGTCCTCCACGACGCCCCCACCGCCGGCAAGTTCTTCAAGCAGCGATGAGTCTAATAACGGCAATAGAAATGCCTCTGCATTAGGAACAACAGCCTCCTTGAAACGAAGGCGTGGAAATGCATCCAATCATAATTCCCAGTTTGCCTTTAATGAATGTCGTGACGTGGCCCTTAAGCTACGGCTATTGCTAATGACACAAGGAAAATGGCAATTGCATGGAATAAACAGGAAAGGAGAGAATGAGAAGCAGGGTGGCAGTGGGGCTGAGTGGTTCATGTGGTGCAGAATTGTTAGGGAGCGTAAAGACGAGGATGAATGA 711 0.519 MKNCELCRTPARTYCESDQASLCWDCDAKVHGANFLVARHSRTLLCHACQSPTPWKASGAVLGNTVSVCRNCDGGVNLSGEDGEESEGGNDNEINSEDDDDEAMLGENNDDNADGDEGGLDVEADHQIVPWSSTTPPPPASSSSSDESNNGNRNASALGTTASLKRRRGNASNHNSQFAFNECRDVALKLRLLLMTQGKWQLHGINRKGENEKQGGSGAEWFMWCRIVRERKDEDE 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0913 236 CDD Bbox1_BBX-like 4 45 - -
Lele30g0913 236 MobiDBLite consensus disorder prediction 138 172 - -
Lele30g0913 236 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
Lele30g0913 236 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 176 - -
Lele30g0913 236 MobiDBLite consensus disorder prediction 84 118 - -
Lele30g0913 236 MobiDBLite consensus disorder prediction 77 172 - -
Lele30g0913 236 SMART bboxneu5 1 45 IPR000315 GO:0008270
Lele30g0913 236 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0913 Lele-ChrLele30 12926396 12928813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0913 2 140 C2C2-CO-like Transcription Factor Family AT4G27310 45.509 1.27e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele30g0913 zf-B_box 3e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0900 11 9262193 9263579 Lele30g0913 30 12926396 12928813 CCT
Lele12g0328 12 3293662 3294401 Lele30g0913 30 12926396 12928813 CCT
Lele30g0913 30 12926396 12928813 Lele32g0472 32 2946313 2948702 hybridization