LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele30g0893	ATGACGATTGGTTCCATCTTCAGCAAAGCTGCCAGAACTTTCCATAGCTATCCTTCTACTTCCAAGCTTCTCCTCCTCTGCAGTCTCAGTCTCCCTGCCTGTGAAAACTGCAGTGGTGGAGGTGTGGTAGCATACTCAGAATTACAATCTGATTCTGGACCTCCAAGAATTGAACCTAATGAGTGTGGGAAAAAGAGAGTAGTGGTTCTTGGAACAGGATGGGCAGGTACCAGTTTCCTTAAGGATCTGGATGCTTCGATATACGATGTTCAGGTTGTTTCGCCTCGCAACTACTTTGCATTTACTCCCTTATTACCCAGTGTCACTTGTGGGACAGTTGAAGCAAGGAGCATTGTGGAGCCAGTTCGGAACATCATAAAAAAGAGAAAAGGAGAAGTTAAATTTTGGGAGGCAGAGTGTGTCAAGATTGATGTTGCAAACAAAAAAGTTTTTTGTCAATCCAATATTGATGCCAAGTTAGTGGGAAATGGCGAATTTTCTCTGGAATATGACTTTTTGGTTGTAGCAACAGGAGCGCAAGCGAATACTTTTAATACTCCAGGTGTCAAGGAGAACTGTCATTTTTTAAAGGAGGTGGAGGATGCTCAGAGGATCAGAACGTCTGTGATAGATTGCTTTGAGAAGGCCATTCTTCCTAGTTTAGCTGAAGAAGAGCGACGGATAAATCTTCATTTTGTGATTGTTGGTGGGGGTCCAACTGGTGTGGAATTTACTGCTGAGCTTCATGATTATGTCCATGAAGATCTATCTAAATTATACCCAATAGCTAAAGATTTGGTGAAAATAACAATAATCCAATCGGGAGATCACATCTTGAACACGAATCATTACACACTAGAAATTGCCATTATGAGAACTTGTCATGAGTTTGTATTGCTGTTTGATGAAAGAATCAGTACATTTGCGGAGCAGAAATTCAGCAGAGACGGTATATTGGTTCAAACAGGATGCCGAGTTACCGAAGTTACTGATAAGGAAATTAAAATGAAGATAAAATCAACAGGAGAGGTTTGCTCAATACCTCATGGATTGGTAGTCTGGTCCACTGGCATTGGGACTCTTCCAGTTGTGAGGGATTTCATGGAACAAATTAATCAGGCTAATAGAAAGGTCCTGCAGACTGATGAATGGTTACGGGTGATAGGATGTGAAGCCGTGTACGCTATTGGGGACTGTACTTCAATACATCAACGTAAAATCATGGATGACATCTCAACCATATTCAAAGCTGCGGACAAAGACGACTCTGGTACCTTAACGATTAAAGAATTCAAGGATGTGATGGATGACATCATCTTGAGATATCCCCAAATGGAACTATATCTGAAGAGCAAGCATATGCTTGATGTGGCTGATTTGTGGAAAGATCCTCAGGGGAAAGACAGAGAGGAAGTAGATATAGAAGGGTTTAAGTCAGCCCTATGTCAAGTGGATTCACAGATGAAGAGTCTGCCAGCAACAGCACAGGTTGCTGCCCAGCAAGGTGCATATCTAGCTAGCTGCTTTAACCGCATGGAGCATTGCACTGAGAATCCTGAAGGTCCAATAAGATTTAGAGAATCCGGACGCCATAAGTTTCGTCCCTTCAGCAAGCAGCAGCAGAACTTCCTGGAGACTGGGTTTCAATGGGTCACAGCACGCAGTGGCTTTGGTACTCCGTATATGCCAGGTAATTTATCTGCCCTAGTCTCAAGAAATTCTTCAATACGGTGGACAGCCTCAAGGGCTTTTCATCAGTCTCCTTCCTGGTCCACGGTTCTTGTAGTCTGCACTGTCAGTGGGGCAGGTTTAGTGGCATATGCCGATGCAGGAGTAGTTCAGAGTCAGAATGGTGGGGATAGAATCCCGAACAAGAAGGTGGTGGTGGTGGGAACAGGATGGGCTGGGACCAGTTTTGTGAAGAATTTGAAAAACCCTTCGTATGATGTGGAAGTAGTTTCGCCCCGTAACTATTTTGCATTTACGCCTTTGCTTCCAAGTGTCACCATCGGCACTGTGGAATCAAGAAGCATTGTTGAACCTATTCGCAAAATCATCAACAAGAAGAACGTAAACGTTCAATTCACACAAGCTGAATGCTTTAAGATCGATGCCAAGAATCGAAAAGTGTACTGTCGTTCTACTGAAGACAGCAAACAAGAATTTTCCATTGATTATGACTACCTCGTTCTCGCCATGGGAGCCCGTTCCAACACATTTAACACCCCAGGTGTTGAAGAGTATACTCACTTCTTGAAGGAAGTGGAAGATGCTCAGAGAATCCGTCGGAAAGTGATAGAACTTTTCGAAAAGGCAAGCCTGCCATGTGTACCTGAAGAGGAGAAGAAGAAACTTCTCCATTTTGTGATAGTTGGTGGTGGTCCGACTGGTGTAGAGTTTGCTGCAGAGCTTCATGACCATGTTCATCAGGATTTATACAAACTATATCCTTCTGCCAAAAACTACGTAAAGATTACACTTTTGGAAGCAGGCGATCATATTCTGAACATGTTTGACAAGAGGATTACTGAGTTTGCTGAAGAAAAGTTCAGAAGAGATGGGATCGATGTGAAACTAGGTTCTATGGTTATAAAAGTTGCTGAGAATGAAATCAGTACAAGAGAAAGAGGAACAGATAAGGTTGCATCTTTACCTTACGGTATGGTGGTTTGGTCAACTGGCATTGGTCCTCGTCCTGAAGCTGTTCAGTTTATGAAAGATATTGGTCAGGGTAATAGGCGTGCAATTAGCACTGATGAATGGTTAAGAGTTGAAGGAGCTGACAACATCTATGCCCTAGGAGATTGTGCCACTAAAAATCAACGTAGAGTTATGGTAGCTGCTCAACAAGGTGAGTATCTTGCAGACTGTTTCAATCGAATGGAGCAGTGTGAGAAATATCCTGAAGGACCCCTTAGGTTTAGAGGAACAGGACGTCATCGTTTTCGTCCCTTCAGGTACAAGCATTTGGGGCAATTTGCTCCGTTAGGAGGAGAACAAGCAGCAGCTCAGCTTCCGGGAGATTGGGTCTCAATCGGACATAGCACACAGTGGCTCTGGTATTCTGTATATGCAAGGTAA	3081	0.4333	MTIGSIFSKAARTFHSYPSTSKLLLLCSLSLPACENCSGGGVVAYSELQSDSGPPRIEPNECGKKRVVVLGTGWAGTSFLKDLDASIYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKRKGEVKFWEAECVKIDVANKKVFCQSNIDAKLVGNGEFSLEYDFLVVATGAQANTFNTPGVKENCHFLKEVEDAQRIRTSVIDCFEKAILPSLAEEERRINLHFVIVGGGPTGVEFTAELHDYVHEDLSKLYPIAKDLVKITIIQSGDHILNTNHYTLEIAIMRTCHEFVLLFDERISTFAEQKFSRDGILVQTGCRVTEVTDKEIKMKIKSTGEVCSIPHGLVVWSTGIGTLPVVRDFMEQINQANRKVLQTDEWLRVIGCEAVYAIGDCTSIHQRKIMDDISTIFKAADKDDSGTLTIKEFKDVMDDIILRYPQMELYLKSKHMLDVADLWKDPQGKDREEVDIEGFKSALCQVDSQMKSLPATAQVAAQQGAYLASCFNRMEHCTENPEGPIRFRESGRHKFRPFSKQQQNFLETGFQWVTARSGFGTPYMPGNLSALVSRNSSIRWTASRAFHQSPSWSTVLVVCTVSGAGLVAYADAGVVQSQNGGDRIPNKKVVVVGTGWAGTSFVKNLKNPSYDVEVVSPRNYFAFTPLLPSVTIGTVESRSIVEPIRKIINKKNVNVQFTQAECFKIDAKNRKVYCRSTEDSKQEFSIDYDYLVLAMGARSNTFNTPGVEEYTHFLKEVEDAQRIRRKVIELFEKASLPCVPEEEKKKLLHFVIVGGGPTGVEFAAELHDHVHQDLYKLYPSAKNYVKITLLEAGDHILNMFDKRITEFAEEKFRRDGIDVKLGSMVIKVAENEISTRERGTDKVASLPYGMVVWSTGIGPRPEAVQFMKDIGQGNRRAISTDEWLRVEGADNIYALGDCATKNQRRVMVAAQQGEYLADCFNRMEQCEKYPEGPLRFRGTGRHRFRPFRYKHLGQFAPLGGEQAAAQLPGDWVSIGHSTQWLWYSVYAR	1026

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele30g0893	1026	SUPERFAMILY	FAD/NAD(P)-binding domain	64	281	IPR036188	-
	Lele30g0893	1026	Pfam	Pyridine nucleotide-disulphide oxidoreductase	625	951	IPR023753	GO:0016491
	Lele30g0893	1026	Pfam	Pyridine nucleotide-disulphide oxidoreductase	65	406	IPR023753	GO:0016491
	Lele30g0893	1026	ProSitePatterns	EF-hand calcium-binding domain.	419	431	IPR018247	-
	Lele30g0893	1026	PRINTS	FAD-dependent pyridine nucleotide reductase signature	726	744	-	-
	Lele30g0893	1026	PRINTS	FAD-dependent pyridine nucleotide reductase signature	627	646	-	-
	Lele30g0893	1026	PRINTS	FAD-dependent pyridine nucleotide reductase signature	787	805	-	-
	Lele30g0893	1026	SUPERFAMILY	FAD/NAD(P)-binding domain	624	839	IPR036188	-
	Lele30g0893	1026	PANTHER	NADH DEHYDROGENASE	621	1025	IPR045024	GO:0003954\|GO:0006116
	Lele30g0893	1026	FunFam	External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial	615	963	-	-
	Lele30g0893	1026	ProSiteProfiles	EF-hand calcium-binding domain profile.	406	441	IPR002048	GO:0005509
	Lele30g0893	1026	Gene3D	-	55	412	-	-
	Lele30g0893	1026	Gene3D	-	458	561	-	-
	Lele30g0893	1026	Gene3D	-	619	1026	-	-
	Lele30g0893	1026	FunFam	External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial	56	435	-	-
	Lele30g0893	1026	SUPERFAMILY	FAD/NAD(P)-binding domain	231	403	IPR036188	-
	Lele30g0893	1026	SUPERFAMILY	FAD/NAD(P)-binding domain	781	957	IPR036188	-
	Lele30g0893	1026	SUPERFAMILY	EF-hand	363	491	IPR011992	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele30g0893	Lele-ChrLele30	12801550	12808914	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele30g0893	946	987	EF-hand Containing Proteins	AT4G28220	73.810	9.92e-15	76.3

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele30g0893	30	12801550	12808914	Lele31g1028	31	17264485	17267698	hybridization
	Lele30g0893	30	12801550	12808914	Lele32g0495	32	3098140	3100986	hybridization