Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0880 ATGCCTCAACGCCAGCCATCATCGTTGATGGAACCAGTGCTTCTCAGTTACAGCAATGGATGCTCCGGCCATGACTGTGATATATTAAGCTGGTTTGACGATGTGACCAAAATCGCTGGTTCTGTTCAGACTCAGATGTTATCCAAGATTCTGAAGCAGAACTCTGAGGTTGAATACCTCAAGAAATGGCTCGGAGACTATAATATTCAAGACATGGATGCCTCTGCATTGGAATCGATTTTCACTTCACTGGTTCCTCTGACGTCACATGCAGATTTTGAGCCCTTTATCCAAAGAATTGCAGATGGCGACACAGCCCCTTTACTCACTCGACAATCCATAACCACCCTTTCCTTGAGTTCTGGAACCACAGAAGGGAGGCAAAAGTTCGTACCTTTCACCCACCATAGCGCACAGACTACCCTCCAAATTTTCACTTTAGCAGCAGCTTATAGATCAAAAGTTTATCCCACAAGAGAAGGAGGGAAGATTATGGAATTCATATACAGCAGCAAGCAGTTCAAAACAAAAGGAGGGTTAACAGCAGGAACAGCCACAACACACTACTATGCAAGCCAAGAGTTCAAGATCAAGCAAGAGAAAACGAAGTCGTTTACTTGCAGTCCATATGAAGTAATCTCTGGAGGAGACTACAAACAAGTCACTTACTGTCACCTTCTTCTTGGCCTTTTTTACTCTGAACAAGTTGAGTTCATAACCTCAGCTTTTGTCTACAGCATAGTTCAAGCCTTTCGCAACTTCGAAGAGCTCTGGAAAGAAATATGCTGTGATATCAGAAATGGTACTCTGAGTTCCAGAATCAAAATACCCAGAATGAGAAACTCTGTTTTGGAGATTCTCTCCGATCCAAACCCATCTCTGGCTTCAAAAATAGAAGCTAAATGCCAGGAACTTGAAAAGTTGAATTGGTTTGGTTTAATTCCTAAGCTGTGGCCAAATGCCAAGTATGTGTATTCCATAATGACCGGATCCATGGAACTTTATTTGAAGAAACTAAGGCATTATGCGAACGGATTGCCATTAGTGAGTGCTGACTATGGATCTACAGAGAGCTGGATTGGTGTTAATGTTGATCCTGGTTTGCCTCCTGAGAATGTAACATTCGCTGTAGTTCCCACTTTCTCTTACTTTGAATTCATACCTCTTCACAGATCCCAGAAATCACAAGAATGCAATTCGGTTACTTATGATTTCGTCGAAGACAAGCCAATTCCCTTGTCGCAGGTTCAAGTTGGACAGAAGTATGAAATAGTCCTCACAACTTTCACTGGGCTATACAGGTGCAGATTAGGGGACGTGGTGGAAGTAGCAGGGTTTCACAACGGGACTCCAAAGTTGAACTTCATATGCAGAAGGAAGCTAATTCTGACCGTGAACATAGACAAGAACACGGAGAAGGACCTGCAACTAGTGGTAGAGAGGGGCTCACAGCTTCTGAGCACGGATCATCAAAAGAATAATAAAGCCGAACTAGTGGACTTCACGAGCTATGCTGACGTGTCAAACCAACCAGGACACTACGTTGTATACTGGGAAGTCAAAGGTGAGGTTGAGGACGAGGTTCTTGAGCAATGTTGTAGGGAGATGGACGAAGCTTTTGTAGATCATGGTTATGTTGTTTCCAGGAAGACTAATTCCATTGGACCTCTTGAGCTTCGATTGGTGGAGAGAGGAACGTTCAAGAAGATTCTAGATTACTTTGTTTCTAATGGAGCTGCTTTGAGCCAGTTCAAGACTCCTAGGTGCACTAATAACCAGGTGCTTCTCAAGATTCTTAACACTTGCACCATCAAAAGTGTTCGCAGCTCTGCTTACTCTTCGTAG 1845 0.4336 MPQRQPSSLMEPVLLSYSNGCSGHDCDILSWFDDVTKIAGSVQTQMLSKILKQNSEVEYLKKWLGDYNIQDMDASALESIFTSLVPLTSHADFEPFIQRIADGDTAPLLTRQSITTLSLSSGTTEGRQKFVPFTHHSAQTTLQIFTLAAAYRSKVYPTREGGKIMEFIYSSKQFKTKGGLTAGTATTHYYASQEFKIKQEKTKSFTCSPYEVISGGDYKQVTYCHLLLGLFYSEQVEFITSAFVYSIVQAFRNFEELWKEICCDIRNGTLSSRIKIPRMRNSVLEILSDPNPSLASKIEAKCQELEKLNWFGLIPKLWPNAKYVYSIMTGSMELYLKKLRHYANGLPLVSADYGSTESWIGVNVDPGLPPENVTFAVVPTFSYFEFIPLHRSQKSQECNSVTYDFVEDKPIPLSQVQVGQKYEIVLTTFTGLYRCRLGDVVEVAGFHNGTPKLNFICRRKLILTVNIDKNTEKDLQLVVERGSQLLSTDHQKNNKAELVDFTSYADVSNQPGHYVVYWEVKGEVEDEVLEQCCREMDEAFVDHGYVVSRKTNSIGPLELRLVERGTFKKILDYFVSNGAALSQFKTPRCTNNQVLLKILNTCTIKSVRSSAYSS 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0880 614 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 28 612 IPR004993 -
Lele30g0880 614 Pfam GH3 auxin-responsive promoter 31 593 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0880 Lele-ChrLele30 12713931 12716482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0880 15 599 EF-hand Containing Proteins AT1G23160 35.726 2.96e-123 374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele11g0879 11 8821214 8822918 Lele30g0880 30 12713931 12716482 CCT
Lele12g0464 12 12568322 12569989 Lele30g0880 30 12713931 12716482 CCT
Lele09g0873 09 6994984 6995502 Lele30g0880 30 12713931 12716482 CCT
Lele10g0801 10 6410236 6410760 Lele30g0880 30 12713931 12716482 CCT
Lele30g0880 30 12713931 12716482 Lele31g1015 31 17177385 17180375 hybridization
Lele30g0880 30 12713931 12716482 Lele32g0508 32 3190214 3192772 hybridization