Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0869 ATGTATTCTTATGACCGGCTCTGTAGTGGACAAATCCCCAGTTTCCGACAACCTCCGCAGAACACCTCGATGATGAATGTGGAGTTGAAAGGTCATACCAGTTTTGACTCACAGACTCAACAACACTTGTTAGAGGATCAGAAGGGAAATAAGATTCCTTTGCATGTAAAATTGAATGTTCTCCTCACGATCGTGATCCATGGCACAAGTGTGAAGGAAATTCCGGTCCTTATCAAATTCAAACTGACCGTGGACAATTTGGAACCAGAAGCGAAAACCTCCCATGTAGAAGATGATGAGAACGTAGAAGCTTGCAGAGATTGTTCCGACGAACACACGGACCTCTGTCTGGTTCTAGACATGTTGGACATCTTGTTCGGGTGCAAGAAGGTGATCAAAAGAGCTCGGTGCAGGCTCAAGCTACTCAAGAACAAGAGGCAGGCAATAGCTAGGCAGTCACGTGAAGATGTCTCTGAGCTTATCAAGTGTGGCCATCAAGAATCTGCCGTCAATCGGGCGGAGCAGCTAATCAAAGATGAAGCTTTATCTGCAGCTTATGAATTATTAGATAACTTCGGTGAATTTATCCTGACCCAACTCTCCTACATCCGAAGGCACAAGGACTGTCCAAACGACATCAATGAAGCAGTTTCGAGTTTGATATTTGCCTCTGCGAGGATTGGAGATCTTCCTGAGCTTTTTGTCATCAGGAAGCTCTTTGGACAGCGTTATGGCCAGAGGTTTGCAACCACTGCTTTGGAGCTACTTCCTGGGAATCTTGTAAACAATCAGTTAATAGAGAGCCTCTCATTGAAGTCTGTGGCGGATGATGTAAAGTACAGAGTAGTCGATGAAATAGCTAGAGACCATTGCCTCCAACCAGAGCTTTTGGCTATTGAGTACTACCCTGATTGGCAACAAATGCAGGAGAGAGAAATCAAAGAGTATCAAGTAGAGGAAGATGGTGGCCCAATAAATGCTAAAATTGCAGGACCAGAGATACATGTTTCAGAGATTGAAAAGATTCAGAGAGAAGTCATTTGCGTTGATTCAACTATCAAGAAGTTGCTGTTCAAGCCAACTAGTTCTTGTTTTCTGCGAGAATCTAACGTTGCTGATGCTTCTGAAATAATTTCTACTATTCAGAAGTATCTCCCTTATATTCAGAGCTTTCCTTTACAAAAGATGGAGAAAGCACAGAACTTCTCTAAGCTCCTTCCCGGTTTAAAAGACACAAGAGAATTGGTAGTATATGACAATGATATAGAGGAATCTCAGTTTTCTGCATCAAGAAAAGGATCCTTTCATCAAATCGATTTGGATAAAATGGAGTCAGAGAGCGACGAGTCAAGCACGAGGAGCTCCAGAAAGAGCAAAAGGGCACATGAGAAAAGAACAAGAAGAAGATCAGCATCACTTGAAAACCAATGCATAATGGATATTGGCTGTTTGGTATATTATCACAAGCCATCCAGAAATACCTCTTCTCCCAGAACTTGCTCTCGCTACCGCTTAAAGCAGCAGAAGCCTTTCATAGAATCATTTCCACAAGCAGGTTATGCGCACAAGAGACTGAAGCAGAATAACTCCTCAGAAACGGGACAAGATGCCTGTATCTTGGACCATCCCTGCTATTGCTCTGTTCATGATGACAATACAGCTATACAAAGTGAAGAAAAACCCATTTCGAATGAAGAATCAAACAAGAGAATGGAATTGTTTTCCGTTCCTCAGAGAGTAGTGTATAATGTATTCACGTACCCAGATTGTAACAAAACAGAAAAGCAGAAGAATAGGTCACCAGAAGCGTATGAAAGATCTGTGACGATGCCCCCAGAGCGCCAAAAAACTAGCAGGGACAAGATGGGGAGGACGTATTCATGTCCGCCCGAATATCCGAAGCATGTTCATCCCAAGTTGCCAGACTATGACGATTTAGCTGCTAAGTTCAACTCTCTCAAGAGAGAACGGCTTCAGAACAGAGGTCCTCAGAGTCTTAGACTCTTGTACTCTGTTCATTTTGATCATCTTCTTCATCTGCCTCCTTTCTCTGCGTACAGCACCCAAAAGGTCTCTATTTCTCAGATGGATAGATTCATCAATGGTGTTGATGGCACTCAAATGAGAGAAAGTGCAGAGTCGAGCTTTCAGGGGCAACAATGGAAGCCAGTTTATGATGAAGCTTTCATGTCTGATAGGCCTGAGCGTCAGATCCTATATGATCCCTCTGTTTCTTTCAATGTGCCTCCACCTTCTTCATCTTCTTCTTCAAGTATCAGATTTTCCTTTGCCCTTGATGACTCTCCCTACCAATCTGCAGCCACAAATCATCAACCCATGAGGTCTTTCGCACTTGATCATCATCATCAGCAGCAGCAGCTTCGGCCATCACACAGTACTAAGCTATACAGAGGAGTGAGGCAACGCCATTGGGGAAAATGGGTGGCTGAGATTCGTCTTCCTAACAGTAGAAATCGCCTCTGGTTAGGCACTTTTGTCACTGCAGAAGATGCTGCTCTGGCTTATGATCGTGAGGCCTTTAAGCTCAGAGGACAGAATGCTAGGCTCAATTTCCCCGACCTCTTTCTCAATAAAGCTCCAAATTCAACAGCTTCTTCTTCTTCCTCAAAGCAGCCTGAACCAGAAGAAGAGAATCATGAGGTTCAGGGAACTGCAGAGGAAGAGAAACTGGTATTGGGAGACATGGAGGCTTGGTACAGCGCGATTCCGCAAGGTTGGGGACCTGAGAGCCCAGTGTGGGATGATTTAGACACCACCAACAATCTTCTGTTTCAGTCACAATTTCCTGCTGTGAGTCCACAAAACCAGCAAGAGTTTAATGATGTTAATAATAATAATGCTCAGAAACAAGAAGACAAGACAGGACCAGATTATTCTTCCGCTTCCTCCTCTGCTTGTCTCATGAAGCCTTTCTTTTGGAACGATTGA 2949 0.4378 MYSYDRLCSGQIPSFRQPPQNTSMMNVELKGHTSFDSQTQQHLLEDQKGNKIPLHVKLNVLLTIVIHGTSVKEIPVLIKFKLTVDNLEPEAKTSHVEDDENVEACRDCSDEHTDLCLVLDMLDILFGCKKVIKRARCRLKLLKNKRQAIARQSREDVSELIKCGHQESAVNRAEQLIKDEALSAAYELLDNFGEFILTQLSYIRRHKDCPNDINEAVSSLIFASARIGDLPELFVIRKLFGQRYGQRFATTALELLPGNLVNNQLIESLSLKSVADDVKYRVVDEIARDHCLQPELLAIEYYPDWQQMQEREIKEYQVEEDGGPINAKIAGPEIHVSEIEKIQREVICVDSTIKKLLFKPTSSCFLRESNVADASEIISTIQKYLPYIQSFPLQKMEKAQNFSKLLPGLKDTRELVVYDNDIEESQFSASRKGSFHQIDLDKMESESDESSTRSSRKSKRAHEKRTRRRSASLENQCIMDIGCLVYYHKPSRNTSSPRTCSRYRLKQQKPFIESFPQAGYAHKRLKQNNSSETGQDACILDHPCYCSVHDDNTAIQSEEKPISNEESNKRMELFSVPQRVVYNVFTYPDCNKTEKQKNRSPEAYERSVTMPPERQKTSRDKMGRTYSCPPEYPKHVHPKLPDYDDLAAKFNSLKRERLQNRGPQSLRLLYSVHFDHLLHLPPFSAYSTQKVSISQMDRFINGVDGTQMRESAESSFQGQQWKPVYDEAFMSDRPERQILYDPSVSFNVPPPSSSSSSSIRFSFALDDSPYQSAATNHQPMRSFALDHHHQQQQLRPSHSTKLYRGVRQRHWGKWVAEIRLPNSRNRLWLGTFVTAEDAALAYDREAFKLRGQNARLNFPDLFLNKAPNSTASSSSSKQPEPEEENHEVQGTAEEEKLVLGDMEAWYSAIPQGWGPESPVWDDLDTTNNLLFQSQFPAVSPQNQQEFNDVNNNNAQKQEDKTGPDYSSASSSACLMKPFFWND 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0869 982 MobiDBLite consensus disorder prediction 938 970 - -
Lele30g0869 982 CDD AP2 801 861 IPR001471 GO:0003700|GO:0006355
Lele30g0869 982 MobiDBLite consensus disorder prediction 429 471 - -
Lele30g0869 982 MobiDBLite consensus disorder prediction 435 456 - -
Lele30g0869 982 MobiDBLite consensus disorder prediction 865 892 - -
Lele30g0869 982 MobiDBLite consensus disorder prediction 591 640 - -
Lele30g0869 982 SMART rav1_2 802 865 IPR001471 GO:0003700|GO:0006355
Lele30g0869 982 Gene3D AP2/ERF domain 802 860 IPR036955 GO:0003700|GO:0006355
Lele30g0869 982 FunFam Ethylene-responsive transcription factor 2 801 860 - -
Lele30g0869 982 Pfam Regulator of Vps4 activity in the MVB pathway 129 290 IPR005061 GO:0015031
Lele30g0869 982 PANTHER IST1 FAMILY MEMBER 128 655 IPR005061 GO:0015031
Lele30g0869 982 PRINTS Ethylene responsive element binding protein signature 825 841 IPR001471 GO:0003700|GO:0006355
Lele30g0869 982 PRINTS Ethylene responsive element binding protein signature 803 814 IPR001471 GO:0003700|GO:0006355
Lele30g0869 982 Pfam AP2 domain 803 851 IPR001471 GO:0003700|GO:0006355
Lele30g0869 982 FunFam Vacuolar protein sorting-associated protein IST1 126 300 - -
Lele30g0869 982 Gene3D - 126 298 IPR042277 -
Lele30g0869 982 Coils Coil 132 152 - -
Lele30g0869 982 SUPERFAMILY DNA-binding domain 802 860 IPR016177 GO:0003677
Lele30g0869 982 ProSiteProfiles AP2/ERF domain profile. 802 859 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0869 Lele-ChrLele30 12636584 12645595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0869 791 924 AP2-EREBP Transcription Factor Family AT4G28140 58.741 1.42e-44 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele30g0869 Ist1 5.9e-47 No_clan