Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0866 ATGGCTCTTCACAGTGAGAACTCTCAACTCAGAGACCGGGGTCAAATCCCAGTCGTTTACCGAAGGACACCGTGTAAATATCCGGGTAGAAACATTGCCTTCCATGTTAATGAAGGATCCACACCTTTTTGGCTATCGCTGTTGGTAGAGTTTGAGGATGGAGACGGAGATATAGGCTCCATGCATATTCAAGAAGCAGGGTCAAGGGAGTGGCTTGAGATGAATCATCTGTGGGAGCAGTTGAAAGCATCATCGGGAAGCTTATTGTCTCAGATGGGCACTCTTCAATCTACACTATTCTACTTGCTTTTGCTACATTCATGGAAGATTTCAGCTAACAAGGATGAAGAATGGAAGTCTGCTACTGCAACATACTCCAAAGACAAAGAGGGGTCGCTCATTACAGAAGGAGCCTGTGGTTATGGAGACCTTCACAAGGCTAGCTATGGGAGATATAGTGCTGGGCTGAGCACTATCTTGTTCAACAGAGGAAGTACCTGTGGGGCTTGCTATGAAATCCGATGTGTAGATCACATCTTGTGGTGCTTGATAGGAAGCCCATCTGTGATTGTTACTGCTACAGATTTCTGCCCTCCAAACTATGGACTTTCAGCAGATTATGGTGGCTGGTGCAATTTTCCAAAGGAGCATTTTGAGATGTCAGAAGCAGCATTTGCTCAGATTGCCAAGAGAAAAGCTGATATAGTGCCGATTCAGTATAGAAGAGTGAAGTGTCGAAGAAGTGCTGGCCTGAAATTTACAATGACAGGTAGTTCCCACTTCTACCAAGTCCTGATTACCAATGTAGGGTTGGATGGTGAAGTAGTTGCCGTGAAGGTGAAGGGATCAAGAACAGGGTGGATACCCATGGCCAGGAATTGGGGGCAAAACTGGCATTGCAGTGTCAATCTTCAACGACAGCCTCTGTCGTTTGAGGTGACCATCATTGGTGGAAGAACGCTCACATCTTACAATGTTGCCCCAGCAAACTGGCAATTTGGACAGACATTTGAAGGAAAGCAGTTTCAGCAATAG 1035 0.458 MALHSENSQLRDRGQIPVVYRRTPCKYPGRNIAFHVNEGSTPFWLSLLVEFEDGDGDIGSMHIQEAGSREWLEMNHLWEQLKASSGSLLSQMGTLQSTLFYLLLLHSWKISANKDEEWKSATATYSKDKEGSLITEGACGYGDLHKASYGRYSAGLSTILFNRGSTCGACYEIRCVDHILWCLIGSPSVIVTATDFCPPNYGLSADYGGWCNFPKEHFEMSEAAFAQIAKRKADIVPIQYRRVKCRRSAGLKFTMTGSSHFYQVLITNVGLDGEVVAVKVKGSRTGWIPMARNWGQNWHCSVNLQRQPLSFEVTIIGGRTLTSYNVAPANWQFGQTFEGKQFQQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0866 344 PRINTS Expansin signature 189 199 IPR002963 GO:0009664
Lele30g0866 344 PRINTS Expansin signature 325 341 IPR002963 GO:0009664
Lele30g0866 344 PRINTS Expansin signature 208 225 IPR002963 GO:0009664
Lele30g0866 344 PRINTS Expansin signature 148 162 IPR002963 GO:0009664
Lele30g0866 344 PRINTS Expansin signature 261 282 IPR002963 GO:0009664
Lele30g0866 344 PRINTS Expansin signature 296 317 IPR002963 GO:0009664
Lele30g0866 344 PRINTS Expansin signature 225 238 IPR002963 GO:0009664
Lele30g0866 344 PRINTS Expansin signature 249 261 IPR002963 GO:0009664
Lele30g0866 344 PRINTS Expansin signature 175 186 IPR002963 GO:0009664
Lele30g0866 344 Gene3D - 24 99 IPR036749 -
Lele30g0866 344 PANTHER EXPANSIN-A15 105 342 IPR002963 GO:0009664
Lele30g0866 344 SUPERFAMILY PHL pollen allergen 30 86 IPR036749 -
Lele30g0866 344 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 260 339 IPR007117 -
Lele30g0866 344 SMART dpbb_1 153 240 IPR007112 -
Lele30g0866 344 Gene3D - 104 246 IPR036908 -
Lele30g0866 344 SUPERFAMILY PHL pollen allergen 248 339 IPR036749 -
Lele30g0866 344 SUPERFAMILY Barwin-like endoglucanases 117 268 IPR036908 -
Lele30g0866 344 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 43 78 IPR007117 -
Lele30g0866 344 Pfam Lytic transglycolase 154 240 IPR009009 -
Lele30g0866 344 Pfam Expansin C-terminal domain 252 328 IPR007117 -
Lele30g0866 344 Pfam Expansin C-terminal domain 32 80 IPR007117 -
Lele30g0866 344 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 136 250 IPR007112 -
Lele30g0866 344 Gene3D - 249 342 IPR036749 -
Lele30g0866 344 PRINTS Expansin/Lol pI family signature 135 153 IPR007118 GO:0005576
Lele30g0866 344 PRINTS Expansin/Lol pI family signature 157 175 IPR007118 GO:0005576
Lele30g0866 344 PRINTS Expansin/Lol pI family signature 325 339 IPR007118 GO:0005576
Lele30g0866 344 PRINTS Expansin/Lol pI family signature 233 249 IPR007118 GO:0005576
Lele30g0866 344 PRINTS Expansin/Lol pI family signature 287 301 IPR007118 GO:0005576
Lele30g0866 344 PRINTS Expansin/Lol pI family signature 117 132 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0866 Lele-ChrLele30 12620116 12625582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0866 95 343 Expansin Gene Family AT4G38210 64.542 2.09e-122 351