Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0859 ATGATTCTTATTTTGTATATACTTGTGCTTTTCAGATTTAGACATCCGAAATATCACATTGTAAACCAGAAAATGGCTGCCTTGGATCAGTATTTTGAGGAGGCTGTGTCCCAAACCAACTCCTTCGGTGAAGATAACACTTATTCAGAAAAGTGGGAATCTGGTGGAGATTCTGATAGGAATGAGTCTAATGGCTTTGACTGCAATATCTGCTTGGACTGTGTGCAAGATCCAGTGGTCACTCTCTGTGGTCATCTCTATTGCTGGCCCTGCATTTACAAATGGCTTCATTTTCACAATCTTTCCAACGAAGAAAATGGCGAAGAACAGAGTCATCCACAGTGTCCAGTATGCAAAACCGAAGTTTCCCAATCCTCGCTCGTTCCACTCTATGGCAGAGGCCAAACCACAAAACCTTCCTCCAAATGCAAGTCCCACCATGTGAGTACTATGATCCCAGAAAGACCACATGGTCCTTTGTCCATGGTTGATCCTCGAAGACCATTTAATGCAACTACCAGTGCTATTCCACAACCGTCTTCCCAATTTTATCATCATGGTCATTATCCTTATTATCATCCTCCTCCTCAAGAGTTCAACTCAATCCCTAGCAGTTCCAACTCAGGAATGCTTGGCATGGGCATTTATGGTGCACTAAGAAACGCATTTGATTCAAGAATTGGTGCGTTTGGTGAGATGATATATGCGAGAGTGTTTGGGAACCAAGTGACCAACGTATATTCTTACCCTAATACATATAATCTAGCAGGGAACAGCAATCCAAGGATCAGAAGGCATTTGATGCAAGCTGATAAGCAACTGAATAGAATCTGCTTTTTCCTGCTTTGTTCTTTAGTTTTGTGTCTTCTCTTATTCTGA 879 0.4187 MILILYILVLFRFRHPKYHIVNQKMAALDQYFEEAVSQTNSFGEDNTYSEKWESGGDSDRNESNGFDCNICLDCVQDPVVTLCGHLYCWPCIYKWLHFHNLSNEENGEEQSHPQCPVCKTEVSQSSLVPLYGRGQTTKPSSKCKSHHVSTMIPERPHGPLSMVDPRRPFNATTSAIPQPSSQFYHHGHYPYYHPPPQEFNSIPSSSNSGMLGMGIYGALRNAFDSRIGAFGEMIYARVFGNQVTNVYSYPNTYNLAGNSNPRIRRHLMQADKQLNRICFFLLCSLVLCLLLF 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0859 292 CDD RING-HC_AtRMA_like 66 119 - -
Lele30g0859 292 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 52 132 - -
Lele30g0859 292 ProSiteProfiles Zinc finger RING-type profile. 68 119 IPR001841 -
Lele30g0859 292 SUPERFAMILY RING/U-box 61 125 - -
Lele30g0859 292 Pfam Zinc finger, C3HC4 type (RING finger) 68 118 IPR018957 GO:0046872
Lele30g0859 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 138 IPR013083 -
Lele30g0859 292 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 30 289 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele30g0859 292 SMART ring_2 68 118 IPR001841 -
Lele30g0859 292 ProSitePatterns Zinc finger RING-type signature. 83 92 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0859 Lele-ChrLele30 12600554 12601432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0859 44 292 C3H Transcription Factor Family AT4G28270 34.524 9.35e-42 141