Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0836 ATGCCTGCGCAGAAGCGGTCTTTGCCGGAGTCTACGGACGATGGAGAGGTCTCAGAACTTTACAACCATCGCCATGCGAAGCAATCTCATCGGGACCGAGAGCTACAAGGCGAGGAAAAGAGGGAAGAGGAAGATAAGCAAGGGGAGCTTGGTGAAGGGGAAGAAGGACAGCAGAACGAGCAAGAGCAGGATAATAAGGAGGAGAAAGCAGAGGCTGGGTTTTGGTCTGGCTTCGCGATCCTGCGAGTTCTGAAGTTTTTGTTTGCCTTGCCAGATTCTGAGGAAAGCCCATCTTCTGAACCCGAAGAGAAACCCGAATTTGTGTTTGTCGAACTTCTGGAAATTCGTAAAGATGTCCAGTGTCCAATTTGCCTTGGCATTATCAAGAAAACACGGACTGTCATGGAATGCTTGCATCGGTTTTGCAGGGAATGCATTGACAAGTCAATGAGACTAGGGAATAATGAATGCCCTGCTTGCCGCACACATTGTGCCAGTCGTCGTTCCTTGAGAGATGATCCAAACTATGATGCTCTAATTGCTGCTCTGTATCCAGATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGACTCGCAATAAGCAGATTCAAGCTTCAATTGCAAAAGTGGTTCAACGGCAATCTGAAGCACTGGTTAAGAGGCGTAACAAGGATACACCACCAGGTGCATTTGTCACAAGGTCACAGCGTAATCAAAGGAATGCTAAGAGACAAAACCATGGAATTGATCAAGGATCAGAAGACAATGAAGAGGAAAATGAAAATAATGGAGAAAAGGATTCATCCTCCACCGATGAGCGGAGTACAGAACCAAAGAAAAAGCGAAAGAGAGGGACAAGAGTTCGTACCTCCCAGCCTTCCTCATCAATGGCAAGCCCTGATGGTGGATTTATAGAGAGTGATGTCGATATAATGAGAGAAAATCGAGGAATTTCTACAAGGCATCTGTCGAAACCTCAGAAGCTTACTTGGGGAAGGGGTGGTTTTAGGAGTCACACCCGACATGGCAGTGGCAGTGGTAGCTCTAGCAAGAATTCCCGCGGTAGTCGTGTGTCTAAGTTTGTTGATTATTTAAGAAGCTTAGACGAAAACACATATGAGTATGATATCCATCTTATGCTTGTTTCTTTGGACAAAGAAAGTATACCAAGCTTGCAGCAGCCTCACCTTTGCTGTCGGCCAACTTTGTCCGTCAAGCACCTTTGTGAATATATTGCTCGTCAGACCCCGTTGCCACCTGAAGAAGTAGAGATATTGGCGGTTAAAGGATGCTGCAGCATCATCTGTGATAAGTCAGCTGATGAGGCTTCATCCTTGTTAAATGACGAGCTTACTACAATGATTGTAGATCCCTCCAAAGATGAACTGGAAATTTTGCAAGTACATGAAACTTTGGCAGGGCTCAAGTCCAAATGCATATCTAAAATGGAGCACCTGATTCTGGCATTTAGGAGGAAGGAGAAAATATAG 1506 0.4522 MPAQKRSLPESTDDGEVSELYNHRHAKQSHRDRELQGEEKREEEDKQGELGEGEEGQQNEQEQDNKEEKAEAGFWSGFAILRVLKFLFALPDSEESPSSEPEEKPEFVFVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEKTRNKQIQASIAKVVQRQSEALVKRRNKDTPPGAFVTRSQRNQRNAKRQNHGIDQGSEDNEEENENNGEKDSSSTDERSTEPKKKRKRGTRVRTSQPSSSMASPDGGFIESDVDIMRENRGISTRHLSKPQKLTWGRGGFRSHTRHGSGSGSSSKNSRGSRVSKFVDYLRSLDENTYEYDIHLMLVSLDKESIPSLQQPHLCCRPTLSVKHLCEYIARQTPLPPEEVEILAVKGCCSIICDKSADEASSLLNDELTTMIVDPSKDELEILQVHETLAGLKSKCISKMEHLILAFRRKEKI 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0836 501 MobiDBLite consensus disorder prediction 346 360 - -
Lele30g0836 501 Pfam Zinc finger, C3HC4 type (RING finger) 120 160 - -
Lele30g0836 501 MobiDBLite consensus disorder prediction 268 284 - -
Lele30g0836 501 MobiDBLite consensus disorder prediction 1 69 - -
Lele30g0836 501 MobiDBLite consensus disorder prediction 219 360 - -
Lele30g0836 501 MobiDBLite consensus disorder prediction 9 69 - -
Lele30g0836 501 SUPERFAMILY RING/U-box 108 175 - -
Lele30g0836 501 MobiDBLite consensus disorder prediction 312 326 - -
Lele30g0836 501 ProSitePatterns Zinc finger RING-type signature. 137 146 IPR017907 -
Lele30g0836 501 ProSiteProfiles Zinc finger RING-type profile. 121 161 IPR001841 -
Lele30g0836 501 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 184 IPR013083 -
Lele30g0836 501 SMART ring_2 121 160 IPR001841 -
Lele30g0836 501 CDD RING-HC_RING1_like 121 161 - -
Lele30g0836 501 PANTHER OS11G0578200 PROTEIN 1 500 IPR044592 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0836 Lele-ChrLele30 12469715 12475469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0836 114 184 C3H Transcription Factor Family AT3G23060 35.135 4.21e-07 50.4