Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0833 ATGAGCATTTCTGAATGCGCAGAGCAAAAGTTCTATGATGATACCCACCAGCTTCTCTTCCCAAAGAAATCAATGATCAGGGACATTGACAACTACATGCCGCCCAGGAAGCTCCTCACTCGTCTTGGCGGCGCCAAAACTGCTATCCACGACGTCGCCGATATGTTCAACGACTCGCCGCGGTTTTCTTCTTCCGATGAAACCCTTCTGCGGAAATTCCTTCCCCGCAACAACCTTGCCGACGAATCCGACGAGGATGATACCGACGCGTACTCCTCTGAACACTTCCGAATGTACGAGTTCAAGGTCCGCCGGTGCAATCGCAGCCGGAGCCACGACTGGACTGACTGCCCGTTCTCTCATCCCGGTGAAAAGGCTCGCCGACGTGATCCCAGAAAGTACCACTACTCCGGCACTATCTGCTCCGAGTACCGCCGCAGCGGCGCATGCGGACGCGGCGATAGTTGCGAGTTTGCACACGGGGTGTTTGAATGTTGGCTCCACCCAGCAAGGTACAGAACGGAGGCTTGTAAGGATGGTAAGAATTGTAAGCGAAAGGTATGCTTCTTCGCTCACACACCTCGCCAACTGAGAATTTTGCCGTTGAATTGCTCCTCTTCTTCACCTGATCAAATCTCCGACAACAAGAAGAACAAATTCTTGAAACCCTCATTGGGATCAAACAATAATTGCTGTATGTTTTGTCATTGCTCTGCTAATAATGCTAATTCTTCTCCGACGTCCACGCTCTTCGGGATGTCCCATTTTTCACCACCGTTGTCCCCTGTGTCGCCGATCAAAACCGGAACCTCTGCAAATAATGGTTTATCACCAATTTCTCGATACAGTGAAAGAATTAACGGATCTGAGTCTTATAATAATCCACGCATGGTCATGAGCTACAGGGATGCTCTCACTGAGTTGATGAACTCCTTGGAAGTTATGAATTTCAAGGAAGCTTCTTCATCACCTGAAATTTCTGCAACTACCACTAATAATAAGTCTCCAAATCTGCACTGGCTTGACGTTTCTTGTTTTAGCTGTGATGATCAGTTCATTCCTTCATATTCTTTCAATTGTGAAGATCAGCAACAGATGATTCCTTCACCATCTTCTCATGAAATTTCCCAGAACCCATTAACAGCTTTATCTGCCTCAAGGAAATTTTCAACTGGAAATATTTTTAACGAAAGCAGAATCGTTGAAGATGATAATAATGGGTCTTCATCATGTGCAACTCCAGATCTGGGTTGGGTCAATGACCTGCTGATATAG 1275 0.4667 MSISECAEQKFYDDTHQLLFPKKSMIRDIDNYMPPRKLLTRLGGAKTAIHDVADMFNDSPRFSSSDETLLRKFLPRNNLADESDEDDTDAYSSEHFRMYEFKVRRCNRSRSHDWTDCPFSHPGEKARRRDPRKYHYSGTICSEYRRSGACGRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPLNCSSSSPDQISDNKKNKFLKPSLGSNNNCCMFCHCSANNANSSPTSTLFGMSHFSPPLSPVSPIKTGTSANNGLSPISRYSERINGSESYNNPRMVMSYRDALTELMNSLEVMNFKEASSSPEISATTTNNKSPNLHWLDVSCFSCDDQFIPSYSFNCEDQQQMIPSPSSHEISQNPLTALSASRKFSTGNIFNESRIVEDDNNGSSSCATPDLGWVNDLLI 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0833 424 SUPERFAMILY CCCH zinc finger 134 165 IPR036855 GO:0046872
Lele30g0833 424 SMART c3hfinal6 171 194 IPR000571 GO:0046872
Lele30g0833 424 SMART c3hfinal6 135 162 IPR000571 GO:0046872
Lele30g0833 424 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 161 IPR000571 GO:0046872
Lele30g0833 424 ProSiteProfiles Zinc finger C3H1-type profile. 136 163 IPR000571 GO:0046872
Lele30g0833 424 Gene3D - 137 200 - -
Lele30g0833 424 PANTHER UNKEMPT FAMILY MEMBER 61 423 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0833 Lele-ChrLele30 12450871 12452145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0833 87 198 C2H2 Transcription Factor Family AT5G07500 66.071 2.35e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele30g0833 zf-CCCH 1.4e-07 CL0537