Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0826 ATGGCTTCGTTGTTCAAGGATCTATCCAAGCTTTCAGCCTATCGAGATAGAAAATTTCCGGGAACACAAGAGGAATTTGAGCAAGCGCTCTTGAATTCAACAACTCTTTATGTGGGGAATATGTCGTTTTACACAACAGAAGAGCAAGTTTATGAACTTTTTTCTCGAGCTGGAGAAATTAAGAAAATTATCATGGGATTGGACAAAAACTCGAAAACTCCCTGTGGCTTTTGTTTTGTTTTATTGTACTCTCGAGAAGATACTGAAGATGCTGTCAAATACATAAGTGGGACAATACTTGATGATCGTCCTATTCGTGTAGATTTTGACTGGGGATTCCAGGACGGAAGACAATGGGGTCGGGGTCGCAGTGGTGGTCAGGTGCGTGATGAATATCGAACCAATTATGACCCTGATATCCTTTTAGATGTTAAGTTTTCATTGAATTGCAATTTCCTTCCCTATAATGAAAGTGATATTGGTACTAGATTAGTTCAGAAAGAGCTGGAGGCACAAAGGCAGCTTGTTGATTATGGTGCTGGTTCTTTGGGCTCTTTTCCACCAGTTTTGCCACCATCCTATGGCAAGCATGGTGGTTCTCATCGGTATGGTAGAGATTACCATAGGAAGAGACACAGAGATGATGATCGCCATGCTTACGAGTCCTCAAAAAGATCTTCAGATCATGAATCACGGAGGAACTCTGATCATGACTCTAGACCGGAAAAAAATCCACGATTTCGTGAGAGTGGTGATTCTGATGATGACGAGGAAGATGATCGAAAAAGAAGATCTTAG 798 0.4135 MASLFKDLSKLSAYRDRKFPGTQEEFEQALLNSTTLYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLLYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTNYDPDILLDVKFSLNCNFLPYNESDIGTRLVQKELEAQRQLVDYGAGSLGSFPPVLPPSYGKHGGSHRYGRDYHRKRHRDDDRHAYESSKRSSDHESRRNSDHDSRPEKNPRFRESGDSDDDEEDDRKRRS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0826 265 MobiDBLite consensus disorder prediction 181 265 - -
Lele30g0826 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Lele30g0826 265 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 139 IPR027157 GO:0000339|GO:0005846|GO:0045292
Lele30g0826 265 MobiDBLite consensus disorder prediction 209 265 - -
Lele30g0826 265 FunFam Nuclear cap-binding protein subunit 2 4 141 - -
Lele30g0826 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Lele30g0826 265 SMART rrm1_1 35 108 IPR000504 GO:0003723
Lele30g0826 265 CDD RRM_NCBP2 36 113 IPR034148 -
Lele30g0826 265 Gene3D - 6 140 IPR012677 -
Lele30g0826 265 SUPERFAMILY RNA-binding domain, RBD 26 137 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0826 Lele-ChrLele30 12410726 12414144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0826 23 128 Eukaryotic Initiation Factors Gene Family AT2G36660 26.415 5.32e-06 45.4