Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0815 ATGGACACACATCCTGAAGCGGAAGTGATAGCCCTATCGCCGAAGACTCTAATGGCGACGAACAGGTTTCTGTGTGAAATTTGTGGGAAAGGGTTCCAGAGGGATCAAAATCTGCAACTTCATAGACGAGGACATAATCTTCCATGGAAGCTGAAGCAGAGGACAAGTAAAGAAGTGAAAAAGCGAGTGTATGTGTGCCCAGAAAAAAGCTGCGTTCACAACCACCCATCGAGGGCTCTGGGAGATTTGACAGGCATCAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAATGGAAGTGTGAGAAGTGCTCAAAGCGGTACGCTGTTCAGTCTGATTGGAAAGCCCACTCCAAAACCTGTGGTACTAGGGAATACAAATGTGACTGTGGCACCATCTTTTCACGGAGGGATAGCTTCATCACACATAGGGCCTTCTGTGATGCCCTAGCAGAAGAAACAGCAAGAGTGAACGCAGCTCCCAACAACATAAGTTACAACACTATAATTGGAGCTGCTTCTTCACTGGGACCAAACAACAATATGGAAACTCATTTTCCTTCAATCTTCAAGCCAATTTCAAACACCAATGATACCGAGGAACAAGCAAATAATCAAACACCTATTAGAGGGCTATCTCTATGGATGGATCATCGTCATCAAACAATAGGGCCTAGTAATGGCAATATCAGTAACCCTACTCATAATCATCAGAATATTCATCAGCTTCATCATCAACTTGGGAACCACCAGATTGTTTCACATCCACAGCAGCTAAATTGGGTGTTTGGAAACAAGCTAATTTCTGGTTCTTCGGCCTCTTGCCAAGAGCTAGCAAGCACCTCAATTGGAATGATAAGTGTTCCTTCCTTGTATAGCTCCCAACATCATCAAAAAAACCAAACAACATCCTCGACAAACATGTCGGCGACCGCGCTGTTGCAGAAAGCTGCTCAGATAGGAGCAAACTCGACCACCTGTGACCCCACATTTCTGGGGAGCTTAGGGTTGAAATGTAGCAGTCAAGGTGGTCAAGATGATGATCATGGAAGTAATAACAAGTATTATGGGATGTACGGTTCAGGTTCAGGTTCGGTTCTCACCAATGTTGGTGGTTTAGGTGGAGGAAGTAATCAGACGACAGAGAACAACAACTCGACAGGTGAAATGTCACAAGTGCACCCAGCAAAACGCCCGAGGCAGGTATTACAGAATGAAGAAGTGGGGCAAACTAGGGATTTCCTTAGTGTTGGTGGTGTGCAAACCATTTGCCACCATTCATCAATCAATGGATGGGTCTGA 1302 0.4516 MDTHPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVKKRVYVCPEKSCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAAPNNISYNTIIGAASSLGPNNNMETHFPSIFKPISNTNDTEEQANNQTPIRGLSLWMDHRHQTIGPSNGNISNPTHNHQNIHQLHHQLGNHQIVSHPQQLNWVFGNKLISGSSASCQELASTSIGMISVPSLYSSQHHQKNQTTSSTNMSATALLQKAAQIGANSTTCDPTFLGSLGLKCSSQGGQDDDHGSNNKYYGMYGSGSGSVLTNVGGLGGGSNQTTENNNSTGEMSQVHPAKRPRQVLQNEEVGQTRDFLSVGGVQTICHHSSINGWV 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0815 433 MobiDBLite consensus disorder prediction 375 398 - -
Lele30g0815 433 SUPERFAMILY beta-beta-alpha zinc fingers 22 119 IPR036236 -
Lele30g0815 433 Gene3D Classic Zinc Finger 56 147 - -
Lele30g0815 433 FunFam protein indeterminate-domain 5, chloroplastic-like 77 156 - -
Lele30g0815 433 Gene3D Classic Zinc Finger 19 46 - -
Lele30g0815 433 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 4 421 IPR031140 -
Lele30g0815 433 MobiDBLite consensus disorder prediction 375 392 - -
Lele30g0815 433 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Lele30g0815 433 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 45 IPR013087 -
Lele30g0815 433 SMART c2h2final6 99 119 IPR013087 -
Lele30g0815 433 SMART c2h2final6 23 45 IPR013087 -
Lele30g0815 433 SMART c2h2final6 64 94 IPR013087 -
Lele30g0815 433 FunFam protein indeterminate-domain 12-like 2 70 - -
Lele30g0815 433 Pfam Zinc finger, C2H2 type 24 45 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0815 Lele-ChrLele30 12327459 12330831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0815 5 433 IDZ Gene Family AT5G44160 52.677 3.10e-137 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele30g0815 zf-C2H2 0.014 CL0361