Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0792 ATGAGCAGTCCCCCGGAAGGCCGCTTTCCTTTCGACTTTCCGGCAAATTTCCCAAGAAGATCCTACACCGATGACACCAATAACTGGAACACCAAAATCTTGTACGTAGCCATTATCTCCTTGTCAATCGTCTTGGTCCTCGTCTTCGCCCTTCATCTCTACGCCAGGTACGTCCTCCGCCGTCAAGCCCGCCGTCGCGCTGCCATCCACCATCTAAGCCTCGCCGTGGCTAGATACTCCTCCGGCGATCCACCAAACAACACCGGCCTCGACCCCACCGTCATTGCCTCTCTTCCCACCTTCGTCTTCAAACGAAGAAACGACAAGTCTCGGAACGAAAACGACGACGACCATCGCCATGTTGATTCTTCCTCTGTTATGGAATGCTCTGTTTGTTTGAGCAATCTGGAGGATGGAGAAGAAGCGAGGCTGCTTCCAAATTGCAAGCACGTGTTCCACGTGGCTTGTATTGACCGGTGGCTGGCGTCTCATTCGACGTGCCCGATTTGTCGAACCATGGCTCGGCCGTTTATTGACCCGCGGCCACGTGAAGGTCCGGTTGGGGTCGGGCTGCCCCTGCCCGCTGCTCCGCCGGTGGCGGAACCCACCGCAGAAGGTACATCTGATGGCGGCGGAGCTAAAAGTAGCGGTTCAGTTTCAAGGTTGAGCTCCTTCAGAAGAATGCTAAGTAGAGAAAGATCTTCCAGAAGAATCCAACCTTCTTCTTCTTCCTCTATCTGTGATGATAGTATTGATCGTGATTTAGAGAGACAGTGA 777 0.5354 MSSPPEGRFPFDFPANFPRRSYTDDTNNWNTKILYVAIISLSIVLVLVFALHLYARYVLRRQARRRAAIHHLSLAVARYSSGDPPNNTGLDPTVIASLPTFVFKRRNDKSRNENDDDHRHVDSSSVMECSVCLSNLEDGEEARLLPNCKHVFHVACIDRWLASHSTCPICRTMARPFIDPRPREGPVGVGLPLPAAPPVAEPTAEGTSDGGGAKSSGSVSRLSSFRRMLSRERSSRRIQPSSSSSICDDSIDRDLERQ 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0792 258 SUPERFAMILY RING/U-box 128 180 - -
Lele30g0792 258 MobiDBLite consensus disorder prediction 178 258 - -
Lele30g0792 258 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Lele30g0792 258 SMART ring_2 129 170 IPR001841 -
Lele30g0792 258 FunFam E3 ubiquitin-protein ligase ATL6 79 176 - -
Lele30g0792 258 CDD RING-H2_PA-TM-RING 128 171 - -
Lele30g0792 258 Pfam Ring finger domain 128 171 IPR001841 -
Lele30g0792 258 MobiDBLite consensus disorder prediction 209 225 - -
Lele30g0792 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 174 - -
Lele30g0792 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 176 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0792 Lele-ChrLele30 12211896 12212672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0792 26 258 C3H Transcription Factor Family AT2G42360 44.958 3.08e-50 163