Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0772 ATGTCACAGTTCAAGAACTTGTTTCTGACCATTCCTCTTTCTTCTTCAAATCCCCAGAAAGAAGAAACCATGCGTCGTCCGATCAAGAAAACCAACTTTTTCAGAGGCCAGGGCGTCGAAGTCTCCGTCAAGGAAGACGGATTTTATGGATCCTACTTCGAAGCCAAGTTCGTTTCTCAACTCGACAATGGGCTCTACGTCGTCAAGTACGACACCTTGCTCGAAGATGACGAGACTCAATTTCTGACGGAAACTCTGTATCCAAAGGAGCTTCGTCCTCGGCCTCCGGCCATCCCTGTTCAGCCGTTTTCTGTTAACCAGAAGGTCGATGCCTTCGACAACGACGGTTGGTGGATCGGCGTTATCACCGGAAAATATGGGCCTGACAGTTATTTTGTGTATTTCTCCTACACGAATCAGGAGATCGCTTACCCTTCCTCTCAGCTTAGGGTTCATCGGGATTGGATCAACGGCAAGTGGGTTTTGCCCAAGAAAGTTCGCTCTTAG 507 0.4832 MSQFKNLFLTIPLSSSNPQKEETMRRPIKKTNFFRGQGVEVSVKEDGFYGSYFEAKFVSQLDNGLYVVKYDTLLEDDETQFLTETLYPKELRPRPPAIPVQPFSVNQKVDAFDNDGWWIGVITGKYGPDSYFVYFSYTNQEIAYPSSQLRVHRDWINGKWVLPKKVRS 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0772 168 SMART agenet_At_2 31 99 IPR014002 -
Lele30g0772 168 SMART agenet_At_2 101 157 IPR014002 -
Lele30g0772 168 Pfam Agenet domain 36 96 IPR008395 -
Lele30g0772 168 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 24 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0772 Lele-ChrLele30 12094916 12095422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0772 45 155 PHD Transcription Factor Family AT5G58610 26.515 6.00e-08 49.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0772 30 12094916 12095422 Lele31g0917 31 16580289 16580738 hybridization
Lele30g0772 30 12094916 12095422 Lele32g0610 32 3766505 3766942 hybridization