LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele30g0767	ATGGAAGTGTGGTCACGTGGACTCCAGCTTCAAGACATGGATGAGAGACGAAATGATGCAGGGCTTGCAGATCAAGGGCCATCAAACACTGCATGGTGGCCATCAGACTTTGTTGAAAAATTTGGATCTGTTTCTCTGGGTTCTCAAGAAGAGACCTTAAATAACAAAGAATCACCTAGACATTTTGAGAAAGATGTTTTGTCTCCTCATAAAGCATCGCAAATTCTCTGGCATACTGGAATGCTTTCAGAACCAATACCAAATGGTTTTTATTCAGTCATTCCTGATAAAAGGCTCAAGGAAATTTTTGATAATATTCCTACTATGGATGAGATTCATGCTTTGGGTGCAGAGGGTCTAAAGGCTGATGTCATTTTGGTGGACGCAGAGAAAGATAAAAAAGTATCTATGTTGAAGCAATATGTCGTGGCCCTAGTGAAAGGATTGAACTCAAATCCAGCTGCGATAATAAGAAAGATAACTGGACTAGTTTCTGATTTTTATAAACGATCAAATGTGGAAAGTCCAGCAAAAGCTGCACTAGAGGAAACCTCCCACATGTTTGAGAATCGAGGTGCCCAGATACTGGGACAAATAAAGAATGGTTCATGCCGTCCTCGAGCAATCTTATTTAAAGTGTTAGCAGATACTGTAGGTCTTGAAAGTAGGCTCATGGTGGGTTTGCCAAACGATGGGGTTGTTGAATATGTAGACTCATACAAGCATATGTCAGTGATTGTTGTATTAAATTCTGTGGAACTGCTGGTTGATCTCATGCGATGCCCTGGTCAATTATTACCTCGATCAAACAAGGCAATTTTCATGACACATATTTCTGCAGCAGGAGAGAGTGATTCTGCAGAAAATGATTCCTGTGATTCACCACTAGAACCAAACAGCCCTTTGTATGGGGTTTCAGAGAAAGTGGATGCTGATAGAGCTGAAAAGGATGAGAACCTCCCATTCCAGAGGAGATTTGATGTATCAGGCCCTTCTTTGCGAAATTTGATGTTACGGTCAAATACCAGTCTGGATAGGAAATTGAGTTTTTCTCATAGTGAACCCAATATTGCAATTGCATTTGGTCGGCCTAGTCGAAGAAGGGTCATTGCAGAACAGAGGACAGCTAGTTCCAGTCCAGAGCATCCATCTTTTAAAGCACGGGGACGGTCAATGCTTAGTGGTGATAGGAAAGCATTCAGAGACTTTGCCGATGATGAGGCTGCATCAAGGTCAGATGGTGCATCTTCATCAGAAGCTCGTAGGATTAGAAGAAGAAGCATCAGCATTACACCTGAGATTGGTGATGATATCGTAAGGGCTGTACGTGCGATGAATGAAACACTGAAGCAGAATCGTCTTTTGAGAGAGCAAGGGGATAATAGCTCAACAGATAGCGTTGGGGACCTTCAGAAAAATGTGTCAAATTTCCATCGAGATGGTCATGAGGGATCTACTTTGAATTCTCTTCCACCTGATCAAGTAAATTCCCAGAAAGCAATGTCATTACCCTCTTCACCGCATGGTTACAGGGGTCAGACATCTGAGACAAGTGGACTGTCGAGATATGGAGTGAACGAATTGCAGTCAACATGGAATAAAATCCTTGAATCTTCAATGTTTAATAATAAACCCCTCTTACCATATGAAGAATGGAATATTGACTTCTCAGAAATAACTGTTGGAACCCGTGTCGGGATTGGGTTTTTCGGAGAAGTCTTCCGTGGTGTATGGAATGGCACAGACGTTGCTATCAAGGTTTTTCTGGAGCAAGATTTAACTGCTGAAAACATGGAAGATTTCTGCAATGAGATATCAATTCTCAGCCGGCTTCGACATCCAAATGTAATCTTATTTCTTGGGGCGTGTACAAAGCCTCCACGCTTGTCAATGGTTACTGAGTACATGGAAATGGGGTCACTGTATTATTTGATCCATTTGAGTGGCGAAAAGAAGAAGCTTAGCTGGCGGAGAAGACTGAAGATGTTGCGAGATATATGCAGGGGGCTGATGTGCATACACCGAATGAAGATAGTGCACCGTGACCTGAAAAGTGCAAATTGTCTTGTGAATAAACATTGGACTGCGAAAATCTGTGATTTTGGGCTTTCAAGGATCATGACAGAGTCTAGTATCAAAGACGCTTCATCGGCCGGAACTCCAGAATGGATGGCTCCTGAACTTATTCGGAATGAACCATTCAATGAAAAGTGCGATATATTTAGCCTTGGGGTGTTGATGTGGGAGCTTTGTACTTTGAACAGGCCATGGGAGGGTATTCCACCAGAAAGGGTGGTTTATGCTGTTGCTAACGAGGGATCTAGACTGGAGATTCCTGAAGGCCCGTTAGGCAAGCTCATTGCAGATTGTTGGGCAGAACCAAATGAACGGCCAAATTGTGAGGAGATCCTCTGTCGCTTGCTTGATTGCGAGTACTCCATGTGCTGA	2448	0.4285	MEVWSRGLQLQDMDERRNDAGLADQGPSNTAWWPSDFVEKFGSVSLGSQEETLNNKESPRHFEKDVLSPHKASQILWHTGMLSEPIPNGFYSVIPDKRLKEIFDNIPTMDEIHALGAEGLKADVILVDAEKDKKVSMLKQYVVALVKGLNSNPAAIIRKITGLVSDFYKRSNVESPAKAALEETSHMFENRGAQILGQIKNGSCRPRAILFKVLADTVGLESRLMVGLPNDGVVEYVDSYKHMSVIVVLNSVELLVDLMRCPGQLLPRSNKAIFMTHISAAGESDSAENDSCDSPLEPNSPLYGVSEKVDADRAEKDENLPFQRRFDVSGPSLRNLMLRSNTSLDRKLSFSHSEPNIAIAFGRPSRRRVIAEQRTASSSPEHPSFKARGRSMLSGDRKAFRDFADDEAASRSDGASSSEARRIRRRSISITPEIGDDIVRAVRAMNETLKQNRLLREQGDNSSTDSVGDLQKNVSNFHRDGHEGSTLNSLPPDQVNSQKAMSLPSSPHGYRGQTSETSGLSRYGVNELQSTWNKILESSMFNNKPLLPYEEWNIDFSEITVGTRVGIGFFGEVFRGVWNGTDVAIKVFLEQDLTAENMEDFCNEISILSRLRHPNVILFLGACTKPPRLSMVTEYMEMGSLYYLIHLSGEKKKLSWRRRLKMLRDICRGLMCIHRMKIVHRDLKSANCLVNKHWTAKICDFGLSRIMTESSIKDASSAGTPEWMAPELIRNEPFNEKCDIFSLGVLMWELCTLNRPWEGIPPERVVYAVANEGSRLEIPEGPLGKLIADCWAEPNERPNCEEILCRLLDCEYSMC	815

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele30g0767	815	SUPERFAMILY	Protein kinase-like (PK-like)	532	806	IPR011009	-
	Lele30g0767	815	SMART	serkin_6	559	808	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele30g0767	815	Pfam	Protein tyrosine and serine/threonine kinase	560	806	IPR001245	GO:0004672\|GO:0006468
	Lele30g0767	815	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	378	807	-	-
	Lele30g0767	815	MobiDBLite	consensus disorder prediction	371	392	-	-
	Lele30g0767	815	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	678	690	IPR008271	GO:0004672\|GO:0006468
	Lele30g0767	815	Pfam	Ethylene-responsive protein kinase Le-CTR1	71	265	-	-
	Lele30g0767	815	MobiDBLite	consensus disorder prediction	480	518	-	-
	Lele30g0767	815	FunFam	Serine/threonine-protein kinase isoform 1	549	637	-	-
	Lele30g0767	815	ProSiteProfiles	Protein kinase domain profile.	559	808	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele30g0767	815	CDD	STKc_MAP3K-like	565	807	-	-
	Lele30g0767	815	MobiDBLite	consensus disorder prediction	452	518	-	-
	Lele30g0767	815	Gene3D	Transferase(Phosphotransferase) domain 1	638	814	-	-
	Lele30g0767	815	Gene3D	Phosphorylase Kinase; domain 1	552	637	-	-
	Lele30g0767	815	MobiDBLite	consensus disorder prediction	284	304	-	-
	Lele30g0767	815	MobiDBLite	consensus disorder prediction	452	473	-	-
	Lele30g0767	815	ProSitePatterns	Protein kinases ATP-binding region signature.	565	586	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele30g0767	Lele-ChrLele30	12036181	12045341	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele30g0767	13	815	MAP Kinase Kinase Kinase	AT3G58640	71.376	0.0	1187

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_CTR1-DRK-1	Lele30g0767		PK_Tyr_Ser-Thr	1.4e-60	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele09g0786	09	6205539	6208630	Lele30g0767	30	12036181	12045341	CCT
	Lele10g0714	10	5439644	5443197	Lele30g0767	30	12036181	12045341	CCT
	Lele30g0767	30	12036181	12045341	Lele31g0911	31	16509495	16516605	hybridization
	Lele30g0767	30	12036181	12045341	Lele32g0615	32	3817959	3827265	hybridization