Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0642 ATGGAACCGGCGGGCTTTGACCGTAATGGGGGTTTCTCGAGTAAGAAAAATTTGAAATCCATTTCTTCGCAGACGGGCATAGCCGATCGTGACAATGGTTGCTTCGAGTGCAATATATGCTTGGAGTCAGCTCATGATCCTGTGGTCACTCTGTGTGGTCACCTGTATTGCTGGCCTTGCATATTCAGGTGGCTTCAAGTTCAGAACTCTTCCGATGAATCAGACCAACCACAACCTACGTGCCCGGTTTGTAAAGCTGATCTCTCTCATACTTCATTAGTCCCTCTTTATGGCCGAGGTGCACATAGTTCGGATTCTGAACTCAAGAAGAAAACCCAGACAGATATAGGAATACCTCGTAGACCGCCTCCTCACAGCTTGAATGCTATGTTAAATTCTACAAGTGCGTCTACTTCTCAACCGGGTCAACTCCACCCGAGTTACTTCCAATCACAGACACATTTCCAATCACAAACACAACAATACTTGCCTCACCTTTATGGAGGATATGCTGTTAATAGATCACCATCATATCTTGGAGTTGCAGCCCTGACTAGTTTCTCCTATCCTATTGTCGATATGTTCAGGGAAACGGTCTTCGCGAGGACCTTTGGGAGTTCTGATCCTAATTCATTGGCGTATCGTTACGTTGGTTACTACCCTAATATTGGAAGTGACAGTCATAGAATGAGAAGGCAGGAACTGCTCATTGACAAGTCTCTAAGCAGAGTGTCTTTCTTTCTCCTCTGTTGTGTCATTCTGTGTCTTCTCTTGTTCTGA 780 0.4513 MEPAGFDRNGGFSSKKNLKSISSQTGIADRDNGCFECNICLESAHDPVVTLCGHLYCWPCIFRWLQVQNSSDESDQPQPTCPVCKADLSHTSLVPLYGRGAHSSDSELKKKTQTDIGIPRRPPPHSLNAMLNSTSASTSQPGQLHPSYFQSQTHFQSQTQQYLPHLYGGYAVNRSPSYLGVAALTSFSYPIVDMFRETVFARTFGSSDPNSLAYRYVGYYPNIGSDSHRMRRQELLIDKSLSRVSFFLLCCVILCLLLF 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0642 259 ProSiteProfiles Zinc finger RING-type profile. 37 85 IPR001841 -
Lele30g0642 259 SMART ring_2 37 84 IPR001841 -
Lele30g0642 259 SUPERFAMILY RING/U-box 33 97 - -
Lele30g0642 259 CDD RING-HC_AtRMA_like 35 86 - -
Lele30g0642 259 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 26 256 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele30g0642 259 Pfam RING-type zinc-finger 37 82 IPR027370 -
Lele30g0642 259 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Lele30g0642 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 110 IPR013083 -
Lele30g0642 259 MobiDBLite consensus disorder prediction 101 144 - -
Lele30g0642 259 MobiDBLite consensus disorder prediction 127 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0642 Lele-ChrLele30 11078607 11079386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0642 9 245 C3H Transcription Factor Family AT4G27470 42.917 3.82e-51 166