Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0621 ATGGAAGCCAAGATGGAGAGGAGGAGAACTTCAGTTGAGAAGGTAAGGAAGGACAACAACATAGTTGAAGAAGAAGAAGTAGAGGATGAGATAGAAGAGGAAGAAGAAAGCGGCGGTGTCGCAGAAGAGCAGAAGAGGAAAGGTGTCATGGGAAGTGGAAGAAGAGGGTCAAGTGGATTTGGTGGAGTTTCTCCACCTTCCTGTCAGGCAGAGAGGTGTGGAGCTGATCTGAGTGATGCAAAGCGGTACCATCGCCGCCATAGGGTGTGTGAGTTCCACTCCAAGGCACCAGTTGTCATGGTTGCAGCGCTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACTTGGGGGAATTTGATGAAGCCAAGAGAAGCTGCAGAAGACGCTTGGCTGAACACAACGAACGTCGCCGCAAAAGCACTGGTGAAATTTACAACGAGAGCTGCAGCCGTGGCAAAGGTCACCACACAAGGGAGAGCCAATGCAGGCATGCTGATGATAGAGGAAGAGTTCAAATGAGCGTTTCTGGGAGCTCTGGCTACAAATCTTTTCACATAAAATAA 570 0.4965 MEAKMERRRTSVEKVRKDNNIVEEEEVEDEIEEEEESGGVAEEQKRKGVMGSGRRGSSGFGGVSPPSCQAERCGADLSDAKRYHRRHRVCEFHSKAPVVMVAALRQRFCQQCSRFHDLGEFDEAKRSCRRRLAEHNERRRKSTGEIYNESCSRGKGHHTRESQCRHADDRGRVQMSVSGSSGYKSFHIK 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0621 189 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 42 160 IPR044817 GO:0003677
Lele30g0621 189 MobiDBLite consensus disorder prediction 133 189 - -
Lele30g0621 189 Coils Coil 17 44 - -
Lele30g0621 189 FunFam Squamosa promoter-binding-like protein 14 61 129 - -
Lele30g0621 189 MobiDBLite consensus disorder prediction 23 38 - -
Lele30g0621 189 MobiDBLite consensus disorder prediction 1 22 - -
Lele30g0621 189 Pfam SBP domain 68 141 IPR004333 GO:0003677
Lele30g0621 189 MobiDBLite consensus disorder prediction 133 172 - -
Lele30g0621 189 ProSiteProfiles Zinc finger SBP-type profile. 65 142 IPR004333 GO:0003677
Lele30g0621 189 SUPERFAMILY SBT domain 66 146 IPR036893 GO:0003677|GO:0005634
Lele30g0621 189 Gene3D - 59 129 IPR036893 GO:0003677|GO:0005634
Lele30g0621 189 MobiDBLite consensus disorder prediction 1 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0621 Lele-ChrLele30 10905735 10906764 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0621 53 153 SBP-box Gene Family AT1G53160 66.667 2.81e-39 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele30g0621 SBP 2.2e-30 No_clan