Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0602 ATGCGCTCTCTCTTTATGGGGGATCTTTTTACCTCGGATCCTTCGATAATTTGCTCTGATCATTTATCGCTTCCGTCGGTTTCTTTCTCCGAGCTGATTCCGGGTTCGTTATTCTCTAGTTATCCGTTTTCCATTGTTGTCTTCCTTCCATTTCTTAAATCAGCACATTTTGACCGCATAGATGAGATGACTGATTCAGATATGAATCAACAAAGGCATGGGAATTCTAATTCTGAACCTTCTATCCTTGTGAGTAGTGACAACATTTTGCAGCCAAATATCCGCACCGTGGCAACAGCTTCAGGGAACTTGAGTAATCTCGATTCCCACTATTTACCAGATGTCTATGACAATGCAGTAATTTATAGAGGGACACCATACAATGCCATTCAAAATCAACGCAATCTTGATATGGGTGTTGCAGCTGTGACCAACTTGAATTATTCTGGCATGAATCCTTCTTCTAGTACTGGCGTATTACCCCTCCCTACTAATCCCGGAGCCTATGATCAGTTGTCAGCATCAAGCACATTTGCTGTGTCTGGAGTTTCTTTAGATAATTTCGGAACGAGTGGCACTTATGTAGATGACGTCAGAGCTTCATTCAAAAGAAAAAATGCTGAAGCTGCTAGAGGCAATTTCCCACATTTTGATGCCTCAGCTAGTTCTTCAGTTATTCCCCCAAATGCAAGGCACTCTGATGGGGTCAGTATGATGGATACTGCTTCCTTGCCTCTGCCTCAATTCCGAGGAAATAACATTCCTTCACCCATGGAATTAGGTCCCCATGGTAGTTTGTGGAGCAGATCAGATGAGCCTGTTATGGTGCATGAACATGGCCATTTGATTCAAGGTAATTATTTAGGGCAGCCCTTCCAGCCAGTTGCTCCTCCTTGGTTGGATCAACAGTTGAATAACAGTCACAGTGATGTACATACTACAGCTTGGAATCAGTCTCTTCCAATGCCTTATATGCAAGCACCCAATGTTAATGGAAGTTCGTTAGAGAATGCAAATATGGGTTTGCAGAGATATCATGATACGGCCAGTATCATAAATGGCCTCAGGTTTGTTCATCCTCCTGTCAACCACCAGCACCATAATTATCATCATCCAGCAATGCCAATGAGAGGATTCAGAGGCCACAATATCATTTTTCAACCTCCAGTAGCTGCAGCTTCTTATAGAGTTCCAACAAATCCTTTACACAATGCCGTGATCCCTGCACAGAATGGTTTCGAGATGGGTCATAGATATGTTGGCCTTGTACCGTCAGCAGGCCTACAGGTATATCGTCCTCATAGAGGATACATGAACGAGACAACAATTGGGCACCGAAATCTTCACCCTATGAGCTATCTCCAAGTTGATGTAGATGTTGCAATACTGGATGAAGTGGGATTAGTCGACCATCACAGAGATATGCGCTTGGACATAGAGGATATGTCTTATGAGGAGCTTCTTGCATTGGGCGAGCGAATTGGCAATGTAAGCACCGGTTTATCAGAAGAGTCCATTTCAGCTTTAGTGAACACTAGAATTTATGCAACTTCCACTATTATTAACCTGGAAAAGGAGGAAGAAACGTCAGAGGATCAGGAAACTGATTCATGCATAATATGCCAGGATAAATACGAGAACAAACAGAAGATAGGAATTCTTCAATGCGGTCATGAGTATCATGCAGATTGCTTGAAGAAATGGCTTCTTGTGAAAAATGTCTGTCCCATATGCAAATCAGAAGCATTGACTCCTGGAAAGGACAAAGGAGTATAG 1776 0.4268 MRSLFMGDLFTSDPSIICSDHLSLPSVSFSELIPGSLFSSYPFSIVVFLPFLKSAHFDRIDEMTDSDMNQQRHGNSNSEPSILVSSDNILQPNIRTVATASGNLSNLDSHYLPDVYDNAVIYRGTPYNAIQNQRNLDMGVAAVTNLNYSGMNPSSSTGVLPLPTNPGAYDQLSASSTFAVSGVSLDNFGTSGTYVDDVRASFKRKNAEAARGNFPHFDASASSSVIPPNARHSDGVSMMDTASLPLPQFRGNNIPSPMELGPHGSLWSRSDEPVMVHEHGHLIQGNYLGQPFQPVAPPWLDQQLNNSHSDVHTTAWNQSLPMPYMQAPNVNGSSLENANMGLQRYHDTASIINGLRFVHPPVNHQHHNYHHPAMPMRGFRGHNIIFQPPVAAASYRVPTNPLHNAVIPAQNGFEMGHRYVGLVPSAGLQVYRPHRGYMNETTIGHRNLHPMSYLQVDVDVAILDEVGLVDHHRDMRLDIEDMSYEELLALGERIGNVSTGLSEESISALVNTRIYATSTIINLEKEEETSEDQETDSCIICQDKYENKQKIGILQCGHEYHADCLKKWLLVKNVCPICKSEALTPGKDKGV 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0602 591 ProSiteProfiles Zinc finger RING-type profile. 538 579 IPR001841 -
Lele30g0602 591 Pfam Ring finger domain 536 579 IPR001841 -
Lele30g0602 591 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 135 583 IPR045191 GO:0061630
Lele30g0602 591 SMART ring_2 538 578 IPR001841 -
Lele30g0602 591 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 496 583 IPR013083 -
Lele30g0602 591 SUPERFAMILY RING/U-box 537 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0602 Lele-ChrLele30 10753373 10757980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0602 470 583 C3H Transcription Factor Family AT2G15530 51.754 7.02e-35 138