Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0587 ATGGATCCTACCAAGAAGCGAAAGCTTGATGATAACGGCGTCGTTCCACCCGATTCCGACTTAAACCTCACTCCTTCCGACGCTCGCAAAATCGTTGAGCGTTTCAGCCCCGAGCAGCTCATCGATGTTCTCCAAGAAGCCGTCGTCCGCCACGCCGACGTCCTCGACGCCGTGCGGTCTATTGCAGACCCTGATGTCACCCAGCGTAAGCTTTTTATTCGCGGTCTTGGATGGGAGACAACCACTGACGGCCTTCGCTCCCTGTTTTCCACCTATGGTGAGCTTGAAGAAGCCATTGTGATCCTTGATAAGGCCACCGGTAAATCTAAGGGGTATGGGTTTGTCACCTTTAAGCACGTTGATGCTGCTTTGCTTGCTCTGAAAGAACCCAGCAAGAGGATAGATGGTCGCGTTACTGTGACTCAGCTTGCAGCAGCTGGGAATACGGGATCAAATACCAATGCTGCGGATATTGCTATGCGGAAGATATATGTTGCGAATGTGCAGTCTGATCTACCGGCTGATAAATTGTTGGCTCACTTCTCACTTTATGGAGAGATTGAAGAGGGGCCATTAGGGTTTGATAAGCAGACTGGTAAGTCGAAGGGGTTTGCACTTTTTGTCTACAAGACGCCAGAGGGCGCACAAGCGGCACTTGTGGATCCGGTGAAGATGGTCGAGGGAAGGCAGCTGAATTGCAAGTTAGCCATAACCGATGGTAAGCAAGGGAAGCGAGGTGGTACGGGGCCAATGGGACCTGACGGAATTCAAGGTCCAGGGAATGCTCATGGGGATGGAATGGGTTTGGCTCCACCTTCTTCCATGCCGGGGTCGCTTTCTGGTCAGTACGGTGGCCCTGTCGGCATGGGATCATATGGGGGCTTTGGGAGTGGGCTTCCTGGTCAGCCTCCCGTGGGGAATCATCCTCTGAATCCATCTGTGGGCGTCACGGGGTTGTCTTCGGCAGGTAATCAGCCGCCCTCTTCTCTGGGAGGTACTGGCGGGTATAGTTCTGGGCTAGGCGGCCCTTATGGTGGCTACGGTGGGCCTGGTTCTACTGGTTATGGTGCATTGGGGGGCGGCGGCAGTGCGAGTCTGGGTGGAGGTAGTGGTGGGTTGGGTGCTGGTGGACTTGGTGGTGGTTCTGGTGGTGGATTGGGGGTTGCTGGTTCTTTGTATAGATTGCCAACTTCAGCAGGAATGCCAACCGGTGGCTATCAAGATAGTGGACCTTATGGTTTATCGTCCGGGTATCCAAATCAACATCATCAACCTACTGGAGCCTCAATTGTACCTAGAGTTCCACCTGGTGTCCCATCACTTATTGGCGCAGATGCTTTATGTGGTTCTGGTGATTACGTGATTGCAGACTATGTGCTTCTGGTGTAA 1389 0.532 MDPTKKRKLDDNGVVPPDSDLNLTPSDARKIVERFSPEQLIDVLQEAVVRHADVLDAVRSIADPDVTQRKLFIRGLGWETTTDGLRSLFSTYGELEEAIVILDKATGKSKGYGFVTFKHVDAALLALKEPSKRIDGRVTVTQLAAAGNTGSNTNAADIAMRKIYVANVQSDLPADKLLAHFSLYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALVDPVKMVEGRQLNCKLAITDGKQGKRGGTGPMGPDGIQGPGNAHGDGMGLAPPSSMPGSLSGQYGGPVGMGSYGGFGSGLPGQPPVGNHPLNPSVGVTGLSSAGNQPPSSLGGTGGYSSGLGGPYGGYGGPGSTGYGALGGGGSASLGGGSGGLGAGGLGGGSGGGLGVAGSLYRLPTSAGMPTGGYQDSGPYGLSSGYPNQHHQPTGASIVPRVPPGVPSLIGADALCGSGDYVIADYVLLV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0587 462 CDD RRM_RBM24_RBM38_like 161 236 - -
Lele30g0587 462 SMART rrm1_1 70 142 IPR000504 GO:0003723
Lele30g0587 462 SMART rrm1_1 162 234 IPR000504 GO:0003723
Lele30g0587 462 PANTHER GEO13361P1-RELATED 52 355 - -
Lele30g0587 462 MobiDBLite consensus disorder prediction 409 427 - -
Lele30g0587 462 Gene3D - 153 269 IPR012677 -
Lele30g0587 462 MobiDBLite consensus disorder prediction 1 22 - -
Lele30g0587 462 SUPERFAMILY RNA-binding domain, RBD 154 264 IPR035979 GO:0003676
Lele30g0587 462 MobiDBLite consensus disorder prediction 313 335 - -
Lele30g0587 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 170 IPR000504 GO:0003723
Lele30g0587 462 FunFam UBP1-associated protein 2C isoform A 52 155 - -
Lele30g0587 462 MobiDBLite consensus disorder prediction 298 335 - -
Lele30g0587 462 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 238 IPR000504 GO:0003723
Lele30g0587 462 SUPERFAMILY RNA-binding domain, RBD 61 144 IPR035979 GO:0003676
Lele30g0587 462 MobiDBLite consensus disorder prediction 402 429 - -
Lele30g0587 462 Gene3D - 51 152 IPR012677 -
Lele30g0587 462 CDD RRM_RBM24_RBM38_like 69 144 - -
Lele30g0587 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 138 IPR000504 GO:0003723
Lele30g0587 462 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 163 220 IPR000504 GO:0003723
Lele30g0587 462 MobiDBLite consensus disorder prediction 239 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0587 Lele-ChrLele30 10617749 10620404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0587 157 336 C2H2 Transcription Factor Family AT2G19380 31.068 3.22e-12 66.6