Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0581 ATGTCGCATTCTGGGAAGCCAGGAGTCGATGCTCTCAACGACCGATTCCACGAGACCTTGAGCTGTGAAGCTAATAAGCCGGATTTTCGAGAGCTCGACTTGGGCTCGCCCGTTTCGCCATTGCGGACTCGTTACAGTGTACCTACTGCCAGTGCCAGCGGACTCACTACTACCAGTAGTAGTTCGAGTTCATCTGGATCGGTCTCTGGACGAAACGGGTACAAACCGTTACCGAAACGATCCGACTACGATCCGAATAATCACTCCGGCGAGCTCTCCGGCTCCGGTGAGAACAGTCCGACCGCTGCAGGGAATGCCAGGAACTTGAAATCTCCTCAAGCTAGATCAGATTCCAAGACCACCCAACCGTTAATTTACTCCGGTCAAAGCTCCTCCGTGAATTCACCGCCGCCGAACTCTCTTCCCACAGGCAATATCTGTCCATACGGCAAGGTTCTGAAGACAGCCGCCGCGGTCAGCCGGAGCTCCAGGACGGACGTTTTGGGTTCTGGGATAGGAAATTACGGTCATGGAAGCATAATGCGGGGCGGTTGTGCGGCGAATGCGAGGGCGAGCGGTGGGGGTGACGTCACAGACTCAGTGAAGCGAGCGGTGGTGAGTGTGGATCCAGAAGAGTTGAAGAGAGCAGGGAACGAGCAGTACAAGAGGGGTCATTTCGCAGAGGCTCTGAGTCTATACGATCGAGCAATTTCATTATCCCCTGCTAACGCAGCCTATCGGAGCAACCGTGCAGCCGCATTGACGGGTTTGGGACGGTTGGCTGAGGCTGTGAGGGAGTGTGAGGAGGCTGTGAGGTTAGATCCCAATTATGGGAGGGCACATCAGCGTTTGGCTTCTCTTTTTCTACGGTTAGGGCAAGTTGAGAATGCCAGGAAACATCTCTTCTGCCCTGGGCTGTCACCTGATCCTTTTGAATTGCAGAAATTGCAATTAGTAGAGAGGCATATTGGGAAATGTACAGATTCCCGGAAGACAGGTGATTGGAAAAGTGTGCTCAGGGAAATTGATGCTGCCATTTCTTCTGGAGTAGACTCTTGTCCTGAGCTCTTTATGTGTGGAGCAGAAGCCCTTTTGAAACTACACCAAGTTGATTATGCTGAATCAACTCTATTAAACAATCCCAAATTAGAACCACATACTAACTTCTCTTCACAGGCAAGATTTTTTGGGATCCTTTCTGAAGCTTATTTCTTCTTTGTGAGAGCTCAGATTGAGATGGCTTTGGGAAGGTTTGAGAACGCAGTTACAGCTGCTGAGAAAGCTGGTCAGATTGATCCCCGAAACATTGAAGTTACTGTTTTGCAAAAAAATGTAAGGATGGTGGCAAGAGCTCGAGCGCATGGCAATGATCTTTTCAAATCCGAAAGGTTCACTGAAGCTTGCTCAGCATATGGGGAAGGTTTGAGGCTGGATCCTTCAAACTCTGTTCTCTACTGCAATAGAGCAGCTTGCTGGTTTAAGCTTGGGCACTGGGAACATTCAATTGAGGATTGCAATCAAGCTTTACATTTCCAACCTAATTACACAAAAGCTCTTCTTCGTAGGGCTGCATCTAATAGCAAGTTAGAAAGGTGGGCGGAAGCTGTCAAAGATTATGAGATCCTGCGGAGAGATCTTCCGGATGACAGTGAAGTAGCTGAAGCTCTGTTTCATGCAGTAGTGGCATTAAAGAAATCTCGTGGCGAGGAAGTGCATGACTTGAAATTTGGTGGTGAGGTGGAAGAAGTATCAGGTCTTGAGCAATTTAGAGCAGCAATAGCATTACCAGGTGTTTCTGTGGTCCATTTTGAAATTGCATCTAACCCACAATGCAAGCAAATCTCACCATTTATGGGTATGTTATGCGGCCGCTATCCTTCTATTAACTTCCTCAAGGTGGATATTCAAGAATGCCCAACAGTTGCAACGGCTGAGAGCATTAGAATTGTACCGACGTTCAAGATCTACAAGAATGGCTGTCGTGTGAAGGAAATAGTGTGTCCTAGTTGCGACATGTTGGAACACTCTGTGAGGCATTATAGCTTTTAG 2049 0.4822 MSHSGKPGVDALNDRFHETLSCEANKPDFRELDLGSPVSPLRTRYSVPTASASGLTTTSSSSSSSGSVSGRNGYKPLPKRSDYDPNNHSGELSGSGENSPTAAGNARNLKSPQARSDSKTTQPLIYSGQSSSVNSPPPNSLPTGNICPYGKVLKTAAAVSRSSRTDVLGSGIGNYGHGSIMRGGCAANARASGGGDVTDSVKRAVVSVDPEELKRAGNEQYKRGHFAEALSLYDRAISLSPANAAYRSNRAAALTGLGRLAEAVRECEEAVRLDPNYGRAHQRLASLFLRLGQVENARKHLFCPGLSPDPFELQKLQLVERHIGKCTDSRKTGDWKSVLREIDAAISSGVDSCPELFMCGAEALLKLHQVDYAESTLLNNPKLEPHTNFSSQARFFGILSEAYFFFVRAQIEMALGRFENAVTAAEKAGQIDPRNIEVTVLQKNVRMVARARAHGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGHWEHSIEDCNQALHFQPNYTKALLRRAASNSKLERWAEAVKDYEILRRDLPDDSEVAEALFHAVVALKKSRGEEVHDLKFGGEVEEVSGLEQFRAAIALPGVSVVHFEIASNPQCKQISPFMGMLCGRYPSINFLKVDIQECPTVATAESIRIVPTFKIYKNGCRVKEIVCPSCDMLEHSVRHYSF 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0581 682 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 18 679 IPR044534 -
Lele30g0581 682 SUPERFAMILY TPR-like 210 438 IPR011990 GO:0005515
Lele30g0581 682 Pfam Tetratricopeptide repeat 405 434 IPR019734 GO:0005515
Lele30g0581 682 SMART tpr_5 516 549 IPR019734 GO:0005515
Lele30g0581 682 SMART tpr_5 482 515 IPR019734 GO:0005515
Lele30g0581 682 SMART tpr_5 210 243 IPR019734 GO:0005515
Lele30g0581 682 SMART tpr_5 451 481 IPR019734 GO:0005515
Lele30g0581 682 SMART tpr_5 244 277 IPR019734 GO:0005515
Lele30g0581 682 SMART tpr_5 402 435 IPR019734 GO:0005515
Lele30g0581 682 Gene3D Tetratricopeptide repeat domain 208 568 IPR011990 GO:0005515
Lele30g0581 682 MobiDBLite consensus disorder prediction 42 71 - -
Lele30g0581 682 CDD TRX_family 587 668 - -
Lele30g0581 682 ProSiteProfiles TPR repeat profile. 402 435 IPR019734 GO:0005515
Lele30g0581 682 FunFam TPR repeat-containing thioredoxin TTL4 574 681 - -
Lele30g0581 682 Pfam Thioredoxin 588 667 IPR013766 -
Lele30g0581 682 Pfam Tetratricopeptide repeat 216 276 - -
Lele30g0581 682 ProSiteProfiles TPR repeat profile. 210 243 IPR019734 GO:0005515
Lele30g0581 682 SUPERFAMILY Thioredoxin-like 485 680 IPR036249 -
Lele30g0581 682 MobiDBLite consensus disorder prediction 22 144 - -
Lele30g0581 682 MobiDBLite consensus disorder prediction 87 140 - -
Lele30g0581 682 Gene3D Glutaredoxin 571 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0581 Lele-ChrLele30 10582879 10586014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0581 447 592 U-box Gene Family AT3G07370 28.415 3.63e-09 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0581 30 10582879 10586014 Lele31g0715 31 14960715 14963902 hybridization
Lele30g0581 30 10582879 10586014 Lele32g0796 32 5277579 5280719 hybridization