Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0566 ATGGAGTCCCCGCCTTACGGCCGTTCATGGGCCACTATGCTGCCGGAACTTCTTGGGGAGATCATTCGCCGTGTTGACTCCACCGAGGACCAGTGGCCCAACCGCCATAACGTCGTTGCTTGCGCTGGCGTGTGCAAGAGGTGGAGGGATATCACTAAGGAGATCGTGCGGTTTCCTTCTTGCGAACGCGGCAGAATTACTTTTCCTTCTTGCCTTAAGAAGTTCGATAAAGGAAATCGAATTGTGAATCCAGTGATTTACCCAGGACCACGTGACCCACCCCATCAATGCATTATAAAGAGGAATAAAAAGACCTCGACATTTCACCTATATCTTGCCTTTGCTCCACCATATAAAGGTAAGTTTCTCTTGGCAGCTAAGAGACATAGGCGTGGTTCTGGTATAGAATATGTACTTTCACTTGACGCTGATGACATATCGCAAGGAAGTAATGCCTATGTTGGAAAGTTAAGTTCAGATTTTCTTGGCACCAACTTCACAATCTGTGATATTCAGCCACCCCATTGTGATGCAAGGCCATCAAATGTCAAGGCCAGCCGTCGTTTTGCCTCCAAGCAAATAAACCCTCAAGTTCCTGCCAGTAACTTTGAGGTGGGGCAGGTATCGTACAAGTTCAACCTTTTGAAGTCGAGAGGGCCAAGGAGGATGGTTTGCTTAATGAAGTTCCCGAACCAATCATCGGGAGAAAGTTCGGATAGCAGATCTCTGGATGTTCACAAGACTAACAATACAGAACAAGCTGCCTCGGAATACTCAATCTTGAAAAACAAATCTCCGAGGTGGCATGAGCATTTGCAATGCTGGTGCTTAAATTTCCATGGTCGTGTGACGGTAGCATCAGTGAAGAACTTTCAGCTAGTTGCTACGGTGGACCAAAGCCAACCAGGAGGGAAAGGAGATGAGGAAACAGTTCTTCAATTTGGGAAAGTAGGGGACGATACTTTCACTATGGATTACAGGAATCCCCTATCTGCATTTCAGGCCTTTGCCATATGCCTAACTAGCTTTGGCACTAAGCTGGCTTGTGAGTAA 1053 0.4672 MESPPYGRSWATMLPELLGEIIRRVDSTEDQWPNRHNVVACAGVCKRWRDITKEIVRFPSCERGRITFPSCLKKFDKGNRIVNPVIYPGPRDPPHQCIIKRNKKTSTFHLYLAFAPPYKGKFLLAAKRHRRGSGIEYVLSLDADDISQGSNAYVGKLSSDFLGTNFTICDIQPPHCDARPSNVKASRRFASKQINPQVPASNFEVGQVSYKFNLLKSRGPRRMVCLMKFPNQSSGESSDSRSLDVHKTNNTEQAASEYSILKNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLQFGKVGDDTFTMDYRNPLSAFQAFAICLTSFGTKLACE 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0566 350 ProSitePatterns Tub family signature 2. 335 350 IPR018066 -
Lele30g0566 350 PRINTS Tubby superfamily signature 137 153 IPR000007 -
Lele30g0566 350 PRINTS Tubby superfamily signature 202 229 IPR000007 -
Lele30g0566 350 PRINTS Tubby superfamily signature 328 350 IPR000007 -
Lele30g0566 350 PRINTS Tubby superfamily signature 307 326 IPR000007 -
Lele30g0566 350 PRINTS Tubby superfamily signature 153 177 IPR000007 -
Lele30g0566 350 PRINTS Tubby superfamily signature 261 278 IPR000007 -
Lele30g0566 350 PRINTS Tubby superfamily signature 279 295 IPR000007 -
Lele30g0566 350 Pfam Tub family 88 345 IPR000007 -
Lele30g0566 350 MobiDBLite consensus disorder prediction 230 250 - -
Lele30g0566 350 Pfam F-box domain 15 57 IPR001810 GO:0005515
Lele30g0566 350 ProSitePatterns Tub family signature 1. 279 292 IPR018066 -
Lele30g0566 350 Gene3D Tubby Protein; Chain A 79 350 IPR025659 -
Lele30g0566 350 SUPERFAMILY Tubby C-terminal domain-like 85 350 IPR025659 -
Lele30g0566 350 PANTHER TUBBY-RELATED 8 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0566 Lele-ChrLele30 10459774 10464530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0566 9 350 TUB Transcription Factor Family AT1G53320 70.370 5.80e-172 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele30g0566 Tub 4.6e-96 CL0395