Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0549 ATGGCTCTGCTCTGTGGTTCATCTTCAGTGACATTCCTTTCATCTTCTGCTAAATCTTCCTATGCTTCTTCCAACATTGGGAATGCCAAAACCGCATTCGTTGGGTTCCAATTAGCACCACCAAAGCCTTCTATACGGACCAATTTGCGCCTCAATTCTAGGGCAAGTTCTCAGGTGCGTTGCCAGGACCTCTCCATTGTCCCTAAAGATGAACGTTGGATGTTCGAGGAATCCGAAGTTAATGGCCCGGACATTTGGAACAAGACTTGGTATCCAAAAGCAGCAGATCATGTGAACACAGATAAACAATGGTACATTGTTGATGCTACAGATAAAATTCTTGGAAGACTAGCATCAACTATTGCAATTTATATCCGAGGGAAAAATTTGGCAACCTATACTCCCAGTGTGGACATGGGTGCATTTGTAATTGTGGTTAATGCAGAAAAAATTGCTGTATCTGGAAAAAAGAGGACCCAAAAGCTCTATAGGAGGCATTCAGGACGACCTGGTGGTATGAAAGTAGAGACATTTGCCCAACTACAGGCGAGAATTCCAGAAAGAATTATTGAACATGCTGTTCGTGGCATGCTTCCAAAGGGGAGGCTTGGCAGACAACTGTTCAACCACCTGAAGGTTTATAAGGGCCCCGATCATCCTCATCAGGCCCAACAGCCCATTGAGTTACCAATAAGGGACAAAAGAATACAAATGCAGAGATAG 723 0.4398 MALLCGSSSVTFLSSSAKSSYASSNIGNAKTAFVGFQLAPPKPSIRTNLRLNSRASSQVRCQDLSIVPKDERWMFEESEVNGPDIWNKTWYPKAADHVNTDKQWYIVDATDKILGRLASTIAIYIRGKNLATYTPSVDMGAFVIVVNAEKIAVSGKKRTQKLYRRHSGRPGGMKVETFAQLQARIPERIIEHAVRGMLPKGRLGRQLFNHLKVYKGPDHPHQAQQPIELPIRDKRIQMQR 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0549 240 Gene3D Ribosomal protein L13 93 236 IPR036899 GO:0003735|GO:0005840|GO:0006412
Lele30g0549 240 CDD Ribosomal_L13 104 217 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lele30g0549 240 TIGRFAM rplM_bact: ribosomal protein uL13 98 229 IPR005823 GO:0003735|GO:0005840|GO:0006412
Lele30g0549 240 Pfam Ribosomal protein L13 102 220 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lele30g0549 240 SUPERFAMILY Ribosomal protein L13 98 232 IPR036899 GO:0003735|GO:0005840|GO:0006412
Lele30g0549 240 Hamap 50S ribosomal protein L13 [rplM]. 104 230 IPR005822 GO:0003735|GO:0005840|GO:0006412
Lele30g0549 240 ProSitePatterns Ribosomal protein L13 signature. 194 216 IPR023563 GO:0003735|GO:0005840|GO:0006412
Lele30g0549 240 FunFam 50S ribosomal protein L13 87 231 - -
Lele30g0549 240 PANTHER RIBOSOMAL PROTEIN L13 90 236 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0549 Lele-ChrLele30 10323926 10326737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0549 106 239 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 29.787 1.00e-06 46.2