Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0547 ATGGCATCTTCCTCCTACCAACTTGTCCTTACCAGCTCTCCTGATGGCCCCATCGTCGCCTTCGATGCCTCTACTGGGACTGCTGTCACTCGCTTTCTGGGCACCCGGTCGCCCCGCTGCGGCCTCACAGTTGCCGGAAACAGCTTCATTGCCGCGTCTCATGTCTCGCCAGACACAGCGGCAGTGTCCATTCACCTCTACAACTGGCACACTTCAAGCGTGCTTCACAGGTTCTCCGTTCCTGAATTTGTTGCCCCACTTGCCGCTACTCACGAAGGCGGCTATATCTTCGCCGGAGGCCAGTCTGGAAGCATCCATTGTTTCTCTGTTCCTTCTGGGGATGTGGTCAAATCTTTTCCTGCTCACACAAAACCCATTTCTTGTCTCCATCTCAGTAATGATGGGTCATTGGTAATTTCAGGCAGTGATGATGGTAGCATTATGGTGATTCCGACTTTTCAAATCGTTGAATCATCAGATTCAAACTCAAAAGACTTGATGATTCTTCACCATTTGAAGGCGCATTCAGATTCAGTTACAGCTTTAAACACAGGAATAACGCTCTGCAACTCCATGCTTGTATCCTCCTCGCTAGACTCAACCTGCAAATTCTGGAATCTTCTAGAAGGGACCCTCCTTCGGACAATGACCTTCCCTTGCGCCATAAATGGAGTGGCCATAGATTCATCAGACTCAAACTTCTTCGCAGCTGGATCAGATGGGTCGGTTTACAAAGCATCAATGAAGAAGGCTAAAAGCAGAAAAACACAGAACGAAGAAGAAGAAGAAGAAGCTCAAGAACAACTGGTGATGAAGAAGTGGAATAGTAAAAGCCACGTGGGTCCCACTGTATCAGTGGTTGTGGTGAATGGAGGGAGGAATCTGGTGTCTGCAGGTGAAGATGGTAGTGTGTGGATGTGGGAGATTGAAACAGAAGAAGTAACAATGGTGATAAAGGATAATAACAGTAATAATGGATTATTAATGGACGAAGGAAGCAGTATCAGTGATATGATAGTGGTGGCAAGTAGTGGGAATGAGGGATACAATAGAGGTAGAGGGAACAGCGGCGGCGGCGGCGGCTTGAGTTCAGGGCTGTTGAAAGAAGAAGTGGTGAGTTCAATGAAGAAGATAATGGAGCTTGGAGAAGTATTGAGTGTGGTGGAGGAAGATAAGAGAAGAGCCATTAAGATGCTGGAGTCTGCAATTTCTATGTATGAGAGGCTGTTGGAGCTCATACTTGAACAGGCTCTGAAAGGTGCTTGTGATGATGAAAGTAATGAAGAAGAAAAGGAAGGAGAAGAGAAAGAAGACAAGTAA 1320 0.4674 MASSSYQLVLTSSPDGPIVAFDASTGTAVTRFLGTRSPRCGLTVAGNSFIAASHVSPDTAAVSIHLYNWHTSSVLHRFSVPEFVAPLAATHEGGYIFAGGQSGSIHCFSVPSGDVVKSFPAHTKPISCLHLSNDGSLVISGSDDGSIMVIPTFQIVESSDSNSKDLMILHHLKAHSDSVTALNTGITLCNSMLVSSSLDSTCKFWNLLEGTLLRTMTFPCAINGVAIDSSDSNFFAAGSDGSVYKASMKKAKSRKTQNEEEEEEAQEQLVMKKWNSKSHVGPTVSVVVVNGGRNLVSAGEDGSVWMWEIETEEVTMVIKDNNSNNGLLMDEGSSISDMIVVASSGNEGYNRGRGNSGGGGGLSSGLLKEEVVSSMKKIMELGEVLSVVEEDKRRAIKMLESAISMYERLLELILEQALKGACDDESNEEEKEGEEKEDK 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0547 439 SMART WD40_4 267 308 IPR001680 GO:0005515
Lele30g0547 439 SMART WD40_4 112 151 IPR001680 GO:0005515
Lele30g0547 439 SMART WD40_4 165 206 IPR001680 GO:0005515
Lele30g0547 439 SMART WD40_4 209 247 IPR001680 GO:0005515
Lele30g0547 439 SMART WD40_4 71 109 IPR001680 GO:0005515
Lele30g0547 439 ProSitePatterns Trp-Asp (WD) repeats signature. 193 207 IPR019775 -
Lele30g0547 439 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Lele30g0547 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Lele30g0547 439 PANTHER WD-REPEAT PROTEIN 18 7 377 IPR045227 -
Lele30g0547 439 Gene3D - 162 349 IPR015943 GO:0005515
Lele30g0547 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 215 IPR001680 GO:0005515
Lele30g0547 439 Gene3D - 2 161 IPR015943 GO:0005515
Lele30g0547 439 MobiDBLite consensus disorder prediction 420 439 - -
Lele30g0547 439 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 7 313 IPR011047 -
Lele30g0547 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 119 149 IPR001680 GO:0005515
Lele30g0547 439 Coils Coil 248 268 - -
Lele30g0547 439 Pfam WD domain, G-beta repeat 169 206 IPR001680 GO:0005515
Lele30g0547 439 Pfam WD domain, G-beta repeat 114 149 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0547 Lele-ChrLele30 10314343 10315887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0547 71 310 U-box Gene Family AT1G04510 25.692 9.96e-09 55.5