Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0535 ATGGATCCCAATTATCATGGCTTACCTCCCCTCAAGAGATTCAGACTCACCCAACAGCAACAAGAGCTCCAGAATCAACAGCGACATCACAATCACAAAATTCAGGATGAAGGAGCCGGCGTTTCCTGCTCAACCTTACCGGCAAAGAAGCGTAAGGAATCTCGAGATTCAACATTTCTTTCCGATTTGTCGGCTTCAGTTTCTGTCAGCGTTTATTCGTTACCAGCTAAGAAACGGGTATGGGCTCTTCAACCTGATTTTGCTTCCGATGGGGGTGTTTCTTCTATTGACCTCAATGTTGAATACAAACCATCGATTGAGGAAGAAGCAAAATCAGTAGATGATGAACCCAATGAAGCTGAGATTCCACTTGTAGCTAATTCCCTTGATGTTGAAAATGAAACTGAAAATGTTGAAGATGTTGATGAGGATGGGATTGTGTGTGCTGTATGTCAAAGCACAGACGGGGATCCATCAGATCCAATTGTTCTCTGTGATGGGTGTGATCTAATGGTTCACGCCTCATGCTATGGAAATCCACTTTTAAATGGAATACCAGAAGGTGATTGGTTCTGTGAAAAATGCAGGGTTTCATCGTCTTCTCAAACTAAGAATGATGATGTAAACAACATTTCTTGTTGCCTCTGTCCTACAAAGGAAGGGGCTATGAAACCCACTGTAGATGAACGGTGGGCTCATATTGTGTGTGCGCTTTTAGTCCCTGAGGTGTTTTTTAAGGACCCAGAAGGAAGAGAATGGATTGATTACTCAAAGGTTCCCAAGAAGAGGTGGTCTGAGAAGTGCTATATTTGTGATTCTTCAAATGGGTGTGCGATTGTGTGTTCTGAGCTTAAGTGTCCTTTGTCATTTCATGTCACTTGTGGATTGAAAGAGGATCTTACCATTGAGTATCGTGAAGGGAAGAAGAATGCTACCATTGTTGCTGGTTTCTGCAAAAGCCACACTGAATTATGGAAAAAGCAACAGCTCTCTGGAAAATACAGAATCGTAGCTGAAGAAAACAAGTAA 1029 0.4227 MDPNYHGLPPLKRFRLTQQQQELQNQQRHHNHKIQDEGAGVSCSTLPAKKRKESRDSTFLSDLSASVSVSVYSLPAKKRVWALQPDFASDGGVSSIDLNVEYKPSIEEEAKSVDDEPNEAEIPLVANSLDVENETENVEDVDEDGIVCAVCQSTDGDPSDPIVLCDGCDLMVHASCYGNPLLNGIPEGDWFCEKCRVSSSSQTKNDDVNNISCCLCPTKEGAMKPTVDERWAHIVCALLVPEVFFKDPEGREWIDYSKVPKKRWSEKCYICDSSNGCAIVCSELKCPLSFHVTCGLKEDLTIEYREGKKNATIVAGFCKSHTELWKKQQLSGKYRIVAEENK 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0535 342 MobiDBLite consensus disorder prediction 19 42 - -
Lele30g0535 342 ProSiteProfiles Extended PHD (ePHD) domain profile. 210 322 IPR034732 -
Lele30g0535 342 CDD PHD_BRPF_JADE_like 147 195 - -
Lele30g0535 342 SMART PHD_3 147 196 IPR001965 -
Lele30g0535 342 SMART PHD_3 267 322 IPR001965 -
Lele30g0535 342 SUPERFAMILY FYVE/PHD zinc finger 134 200 IPR011011 -
Lele30g0535 342 PANTHER PHD FINGER PROTEINS 79 322 - -
Lele30g0535 342 Pfam PHD-zinc-finger like domain 212 321 - -
Lele30g0535 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 201 IPR013083 -
Lele30g0535 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 324 IPR013083 -
Lele30g0535 342 ProSiteProfiles Zinc finger PHD-type profile. 145 198 IPR019787 -
Lele30g0535 342 Pfam PHD-finger 147 197 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0535 Lele-ChrLele30 10228615 10230206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0535 46 340 C2H2 Transcription Factor Family AT3G14740 56.550 1.87e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele30g0535 zf-HC5HC2H_2 2.7e-30 CL0390