Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0506 ATGGCTGCGGTTGCTGAGATTTCCGTAGACGCAGTAGCTGCTAACAAGTTGGACTCAAATTCCAAGTCCGAATCCGAATTCAATGTCCAAAAACTCGTCGATATGTTCACTAAGTTGAATCCTTTGGCGAAAGAGTTTTTCCCTTCGAGTTATTCTCCCCATGATCATCTCCATCAGGGCTATCATCAGCTCCCACCGAACAATTTTCTGGGCAGCAATAATATGGCTGCTGATGTTAATCACCCAAATAATCGAAGGAGAAGAACTAATTATGGCCAGGGGAGGAGAAGGTCCAATGGAAGAGTGCATAAGGCTCAGAGAGATGATAGCATTAGACGAACAGTATATGTTTCTGACATAGATCAGCATGTTACTGAGGAGCAGCTTGCTGCCTTATTTACTAGTTGTGGACAAGTTATTGACTGCCGAATTTGTGGTGATCCGCATTCAATTCTTCGTTTTGCATTTGTGGAGTTTGCAGATGAGCAAGGTGCTAGAGCAGCTTTAAACCTTGGTGGCACTGTGCTTGGATATTATCCAGTTAGGGTCCTTCCGTCCAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCTCGGTCTGAGGATGAGAGGGAAATGTGTAGCAGGACTGTCTATTGTACAAATATTGATAAAAAGATTTCTCAAGCTGAAGTGAAAAACTTTTTTGAAACAGCTTGTGGTGAGGTTACTCGCTTGAGGCTTTTAGGAGATCATGCTCATTCAACTCGAATTGCTTTTGTAGAATTTGCAATGTGGGATGCCCTTGGGAAGCCAGCCTATCAGGGTAAGTCCTTCAAAGACACCTGTGAGGCCAAGAATCCCCCATCCAACACCGCATTAACTGATGAACATCCAAGAACTTACAGAGGCAATTTGGTCAACTTTCCTGTTGAGGCTTGTGTTGAAGGGGTGGTGAAGTTTCCTTTATTTCAGCTGTTCCATTTTCACAATCATGGAAGTTGCTTTAGTATTGCCCAAACATATTATGTTCTGCTCTAA 1023 0.4321 MAAVAEISVDAVAANKLDSNSKSESEFNVQKLVDMFTKLNPLAKEFFPSSYSPHDHLHQGYHQLPPNNFLGSNNMAADVNHPNNRRRRTNYGQGRRRSNGRVHKAQRDDSIRRTVYVSDIDQHVTEEQLAALFTSCGQVIDCRICGDPHSILRFAFVEFADEQGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKISQAEVKNFFETACGEVTRLRLLGDHAHSTRIAFVEFAMWDALGKPAYQGKSFKDTCEAKNPPSNTALTDEHPRTYRGNLVNFPVEACVEGVVKFPLFQLFHFHNHGSCFSIAQTYYVLL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0506 340 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 35 260 - -
Lele30g0506 340 FunFam Polyadenylate-binding protein-interacting protein 11 78 190 - -
Lele30g0506 340 Pfam Ataxin-2 C-terminal region 35 50 IPR009818 -
Lele30g0506 340 CDD RRM1_CID8_like 111 190 IPR034823 -
Lele30g0506 340 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 188 IPR000504 GO:0003723
Lele30g0506 340 SMART rrm1_1 114 184 IPR000504 GO:0003723
Lele30g0506 340 SMART rrm1_1 211 278 IPR000504 GO:0003723
Lele30g0506 340 SUPERFAMILY RNA-binding domain, RBD 113 261 IPR035979 GO:0003676
Lele30g0506 340 MobiDBLite consensus disorder prediction 77 107 - -
Lele30g0506 340 Gene3D - 72 189 IPR012677 -
Lele30g0506 340 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 257 IPR000504 GO:0003723
Lele30g0506 340 Gene3D - 203 271 IPR012677 -
Lele30g0506 340 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 258 IPR000504 GO:0003723
Lele30g0506 340 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 177 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0506 Lele-ChrLele30 9984430 9990445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0506 101 262 Eukaryotic Initiation Factors Gene Family AT1G34140 24.852 7.25e-10 58.2