Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0469 ATGTACAGAAGGCTTCGAAAGTTTGAGACTGGTGTCACATCAGAAGCATCAAACAAAACAAGAGCAGCTAAAGTTTCTGGATGTGGAAGAGATCAAAAAGAAACGACAGGCAAAGATATTTTGAGCAAACTGAGGAAAGTAGATTTGGCAGATCAAGAATGGGTCAATAAGATTCCAGAGTGTCCAGTGTTCTACCCATCAGAACAGGAGTTTGAGGATCCTTTAGTTTATCTGCAGAATATTTGCCTGAGGCACACAAATATGACTTTCTGCATACTTGTAATAATAAAGCTTCTTTTGGATATTTCAGGAACGTGCAAAATTGTTTCTCCTCTAAATGCCTCTATTCCAGCTGCTGTTGTGTTAATGAAAGAGATAGAAAAGTTCAAGTTTGAAACCATTGTACAACCTCTTCAGTTTTCTGAATGGAAAGAGGACAATGAAACAATCTATTCTCTCAGAGGCAGAAAATACACTTACTGTGATTTCGAGACTTTGGCGAACAAGGCCTTTCTCGGTCGGTTTTGCAGTTCAGGAAGTCTTCCTTCTTCATATGTGGAAAAGTTATTCTGGCATGAGATGGAGCATGGAGATCAGATGGCAACAGTTGAGTATGGAGTCAATGTTGAAGGTAGTGCTTTTTCATGTGATCCTGATGACAAGCTTGCACAAAGCAAATGGAATTTGAAGATCACTATTTGTACAGCGTCTCGATTCGAAGAGGTTTCCTTAGAACATGTGTTCCATAATAAGATTTTATCATCAAAACATGATGGAGAGGCTGGTGCCTTCCAAGCTCTTGCTCATAAAACAACCATGTTTTCTCCAAATGTCTTGCTCCAACATGGTGTGCCAGTTTACAAGGTTGTACAGAAGCCTGGAGAGTTTGTCATCACCTTTCCTAGATCATATCATGCTGGAGTTAGTCATGGATTCAACTGTGGAGAAGCAGTAAACTTTGCAATAAGTGATTGGTTTCCATTAGGGGCTGAAGCTACAAGTCTTTATGCACATCTTAGAAAGATGCCTCTTATTCCCTTTGAGGAACTTCTTTGTAATGAGGCCATGCTAATTTACAAGGCCCCAAATCATCTCAAAGGCTCCAATAATGAACTCGATTTGGAATCCGACCACGCTATGAAGCTATCATTTCTGCAGCTCATGCGATCTTACGACGTGGCCCTTTCAAGACTAGAAAAAAGTTCATCACCGTGTTCAATAGGTTCTTCAAAGTCTCTAGGTACTGTGGTATGCAGCCTCTGCTGTAGAGACTGTTATGTGGCTTTCTTGCTCTGCAAGTATTGCAATGTTCTTCCCATTTGTATTTTCCATGATGAAACTGAGACTCAGACTTGCTCTTGTGGTAGAACATGTGCGCTTTTCAAGAGTGATGAAATGTTGGAACTGATGGATGCTGCTACAAGTTTTGAGGAGGAAAAAGACATTTTGTTGTAA 1455 0.4027 MYRRLRKFETGVTSEASNKTRAAKVSGCGRDQKETTGKDILSKLRKVDLADQEWVNKIPECPVFYPSEQEFEDPLVYLQNICLRHTNMTFCILVIIKLLLDISGTCKIVSPLNASIPAAVVLMKEIEKFKFETIVQPLQFSEWKEDNETIYSLRGRKYTYCDFETLANKAFLGRFCSSGSLPSSYVEKLFWHEMEHGDQMATVEYGVNVEGSAFSCDPDDKLAQSKWNLKITICTASRFEEVSLEHVFHNKILSSKHDGEAGAFQALAHKTTMFSPNVLLQHGVPVYKVVQKPGEFVITFPRSYHAGVSHGFNCGEAVNFAISDWFPLGAEATSLYAHLRKMPLIPFEELLCNEAMLIYKAPNHLKGSNNELDLESDHAMKLSFLQLMRSYDVALSRLEKSSSPCSIGSSKSLGTVVCSLCCRDCYVAFLLCKYCNVLPICIFHDETETQTCSCGRTCALFKSDEMLELMDAATSFEEEKDILL 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0469 484 ProSiteProfiles JmjN domain profile. 61 117 IPR003349 -
Lele30g0469 484 Pfam JmjC domain, hydroxylase 255 320 IPR003347 -
Lele30g0469 484 SUPERFAMILY Clavaminate synthase-like 267 357 - -
Lele30g0469 484 Pfam jmjN domain 62 81 IPR003349 -
Lele30g0469 484 Gene3D Cupin 233 381 - -
Lele30g0469 484 SMART cupin_9 142 337 IPR003347 -
Lele30g0469 484 Gene3D Cupin 44 232 - -
Lele30g0469 484 ProSiteProfiles JmjC domain profile. 161 337 IPR003347 -
Lele30g0469 484 PANTHER LYSINE-SPECIFIC DEMETHYLASE 53 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0469 Lele-ChrLele30 9689977 9692492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0469 239 351 C2H2 Transcription Factor Family AT5G04240 41.593 2.10e-23 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele30g0469 JmjC 5.3e-21 CL0029