Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0457 ATGGGTTATGACTTGTGCTGTTCAATTTCGAGAATTGTTAGTTTAGGGTTCATCTTTGGCAGAAAACTGGGCGTGGGATTTGAGAGTCTGTCCATTTGGGCCTGGCATACCGATCTAAGCAACATGATGAGGTTACAGACATATGCGGGGCTTAGTTTGATATCAACTCTAGTTGTTACATATCATGCATTCAGCAGCAGAGGTCAATTTTATCCAGCAATGGTTTTCCTGTCAACTTCCAAGATCAGCTTGGTACTTCTTCTCAACATGGGTCTCGTCATTATGTGTCTTTTATGGCAATTAACAAAGAAGGTTTTCCTTGGCACACTCCGAGAGGCAGAGGTTGAGAGGCTTAATGAGCAATCATGGAGGGAGGTTATGGAAATTCTCTTTGCCATCACCATTTTTCGGCAGGATTTCTCTGTTACATTCCTTGCTATGGTCACAGCACTGTTGTTGATCAAAGCTTTACATTGGTTGGCTCAGAAAAGAGTTGAATATATTGAGACAACTCCTACAGTGCCCTTGTTGTCTCACATTCGAATCGTGTCTTTTATGGGTTTCCTCCTCCTTCTGGATGGACTCTTCTTATATAGTTCCTTGAAGCATTTGATACAATCATGGCAGGCTTCAGTTTCCCTCTTTTTTGTTTTCGAGTACATGATACTGGCAACAACAACAGTGTCAATTTTTGTAAAATATCTTTTCTATGTTAGTGACATGCTTATGGAAGGACAATGGGAAAAGAAACCAGTCTTCACATTCTACTTGGAACTTGTTAGGGATCTGCTTCACTTGTCTATGTATATGTGTTTCTTCCTTGTAATTTTCATAAATTATGGTGTGCCTTTGCACTTAATACGGGAGCTGTATGAGACATTTAGGAACTTCAAAGTTCGTGTTGCTGACTACATACGTTATCGTAAGATTACTTCAAATATGAATGATCGGTTTCCAGATGCAACCCCCGAAGAGCTTAATGTAAGCGATGCTACATGTATTATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTTATATGCGGACATCTTTTTCATGTGCATTGCCTCCGATCATGGTTGGAGCGACAACATACTTGCCCTACCTGCAGAGCGTTGGTTGTACCACCTGAAAATGGGGCAACTACTGCTGGAGGTCAGCATGGACCACAGTCAGATCGACAGGGAACAGGACCAGGAACAAGTACTGGAAGCTCAGCTGAAGCTGAAGTTGGCAGTGGGGCGGATACTGATAATTTGAGTCTTCATCAAGCTAGACTCCGAGCTGCAGCTGCCGCTGCTTCAATGTATGAGAAGTCTTTTGTGTACCCATCCACAACTTCTTTAGTATGCGCCCCTGGATACACTGTTTATCCTCCTGTTCAAAGACCTGCTGCTGAATCTACTAGTACTGAACTTAATGTAGAACATACTTCAAGTGAACAAACACGACGACAGTTTGTCATCCCTGGTGGACCAATGAATGTTTCCTTTCATCCGATGGCGTTTCCTTTTCCTCCTTCTCTAACACATGTAGCAAATGGGAATTATGCAGAGGGATCTGGATCTGATCCAAATATGCCTAACTCTCTGCTCGAAGCTCAAAGAATTCAACAACAGATTGAGATTCTGCAAAATCAGCTCCAGGATCTGCTGAAGGCGAGTGTTGAGGAAAATGCAAATGAGGGCAAGTCATCATCATCAAGTGGCAAAGACAAGCAGGTTGCTTCCTCTTCTTCATCGTAA 1746 0.4261 MGYDLCCSISRIVSLGFIFGRKLGVGFESLSIWAWHTDLSNMMRLQTYAGLSLISTLVVTYHAFSSRGQFYPAMVFLSTSKISLVLLLNMGLVIMCLLWQLTKKVFLGTLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVPLLSHIRIVSFMGFLLLLDGLFLYSSLKHLIQSWQASVSLFFVFEYMILATTTVSIFVKYLFYVSDMLMEGQWEKKPVFTFYLELVRDLLHLSMYMCFFLVIFINYGVPLHLIRELYETFRNFKVRVADYIRYRKITSNMNDRFPDATPEELNVSDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGATTAGGQHGPQSDRQGTGPGTSTGSSAEAEVGSGADTDNLSLHQARLRAAAAAASMYEKSFVYPSTTSLVCAPGYTVYPPVQRPAAESTSTELNVEHTSSEQTRRQFVIPGGPMNVSFHPMAFPFPPSLTHVANGNYAEGSGSDPNMPNSLLEAQRIQQQIEILQNQLQDLLKASVEENANEGKSSSSSGKDKQVASSSSS 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0457 581 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 305 380 - -
Lele30g0457 581 CDD RING-H2_synoviolin 330 371 - -
Lele30g0457 581 SMART ring_2 333 370 IPR001841 -
Lele30g0457 581 Coils Coil 534 561 - -
Lele30g0457 581 MobiDBLite consensus disorder prediction 555 581 - -
Lele30g0457 581 Pfam Ring finger domain 332 371 IPR001841 -
Lele30g0457 581 ProSiteProfiles Zinc finger RING-type profile. 333 371 IPR001841 -
Lele30g0457 581 MobiDBLite consensus disorder prediction 384 416 - -
Lele30g0457 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 378 IPR013083 -
Lele30g0457 581 PANTHER RING ZINC FINGER PROTEIN 39 565 - -
Lele30g0457 581 MobiDBLite consensus disorder prediction 381 416 - -
Lele30g0457 581 SUPERFAMILY RING/U-box 313 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0457 Lele-ChrLele30 9589161 9596008 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0457 42 571 C3H Transcription Factor Family AT3G16090 64.060 0.0 655