Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0427 ATGGGAAGGAACTGCAATTTTGAAGTCAATTTCATAGTAGACATGGAGGAAGGTGATGATTATGTGGAGTATGTGCCTGTGGCCAAGCGTAGGGCCATGGAGGCTCAGAAGATTCTTCAACGAAAAGGAAAATCATCCTCTACAGTTGATGATGATATGGAGAAATCAACAGTGGCTGAAGCTAAACCGAGTCTTTTGGTTAAGGTGTCACAGTTGAAACGGGATCAACCTGAGATTAGTCCGACAGAGCAGCTTGTTCAACAAGAAAAAGAGATGATTGAGAACTTATCAGATCGAAAAACTCTGATGTCTGTTCGGGAATTGGCTAAGGGAATCACCTATACGGATCCTTTGCCTACTGGATGGAAGCCACCTTTACCAATTAGAAGAATGTCAAAAAAAGCATGCGATTTGATTCGGAAGCAGTGGCATATAATAGTTGATGGTGAAGACATCCCACCCCCAATTAAGAACTTCAAGGACATGAGGTTTCCTGAGCCTATTTTGAAGAAGTTGAAAGAAAAAGGGATTGTTCAACCAACACCTATCCAAGTACAAGGCCTTCCCGTGGTCTTATCCGGGAGGGATATGATCGGGATCGCATTCACGGGATCAGGGAAAACTCTAGTCTTCGTATTGCCAATGATCATGGTGGCAGTGCAAGAGGAAATTATGATGCCTATTGTACCAGGAGAAGGTCCATTTGGTTTGATTATTTGCCCATCAAGGGAACTAGCTAGACAGACTTATGAAGTAGTTGAACAGTTCTTGCTACCTCTGAGAGAAGCAGGATATCCTGAACTCCGGCCATTGCTTTGTATTGGTGGGGTAGATATGAGGTCACAGCTAGATGTTGTGAAGAAGGGTGTTCACATTGTTATTGCCACCCCTGGTAGGTTAAAGGATATGTTAGCAAAGAAAAAAATGAATCTTGATAATTGCAGGTATTTAACATTAGATGAGGCTGATAGATTGGTAGATTTGGGATTTGAAGATGACATTAGAGAAGTGTTTGATCACTTCAAAGCTCAAAGGCAAACGCTTTTATTTTCTGCCACCATGCCAACAAAAATTCAGAATTTTGCTAGAAGTGCTCTAGTGAAACCAGTCATTGTCAACGTGGGGCGAGCAGGGGCGGCAAATCTTGACGTAATCCAGGAGGTAGAGTATGTTAAGCAAGAGGCAAAAATAGTGTATCTCCTTGAGTGCCTGCAAAAAACCCCACCTCCAGTTTTAATATTCTGTGAGAATAAGGCTGATGTTGATGACATTCATGAATATCTTCTCTTGAAAGGAGTGGAAGCAGTGGCTATTCATGGTGGCAAAGACCAGGAAGAGAGAGAGTATGCAATTGCAGCCTTTAAAGCTGGAAAGAAAGATGTGTTGGTTGCAACTGATGTTGCATCCAAGGGATTGGATTTTCCTGATATTCAGCATGTTATTAACTATGACATGCCTGCTGAAATTGAAAACTATGTTCATAGGATTGGACGAACCGGACGATGCGGCAAGACCGGCATAGCAACAACGTTTATTAACAAGAATCAAACTGAGACAACCTTGCTTGACTTGAAACATCTGTTGCAAGAAGCAAAACAGCGTATTCCCCCAGTTTTAGCAGAGCTGAATGATCCGATGGAATACAACGAGGAAATCACGGATAAAAGCGGGGTCAAGGGCTGTGCGTATTGTGGCGGGCTCGGTCATCGCATTCGGGACTGCCCGAAATTGGAACATCAGAAGAGCATGGCAATTGCAAATAACAGAAGGGATTATTTTGGTTCTGGTGGATACAGAGGAGAAATATGA 1809 0.4273 MGRNCNFEVNFIVDMEEGDDYVEYVPVAKRRAMEAQKILQRKGKSSSTVDDDMEKSTVAEAKPSLLVKVSQLKRDQPEISPTEQLVQQEKEMIENLSDRKTLMSVRELAKGITYTDPLPTGWKPPLPIRRMSKKACDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPILKKLKEKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIMVAVQEEIMMPIVPGEGPFGLIICPSRELARQTYEVVEQFLLPLREAGYPELRPLLCIGGVDMRSQLDVVKKGVHIVIATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPVIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIAAFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLQEAKQRIPPVLAELNDPMEYNEEITDKSGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRRDYFGSGGYRGEI 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0427 602 Gene3D - 382 544 IPR027417 -
Lele30g0427 602 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 188 372 IPR014001 -
Lele30g0427 602 Pfam DEAD/DEAH box helicase 181 360 IPR011545 GO:0003676|GO:0005524
Lele30g0427 602 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 157 185 IPR014014 GO:0003724
Lele30g0427 602 SMART ultradead3 176 387 IPR014001 -
Lele30g0427 602 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 233 518 IPR027417 -
Lele30g0427 602 SUPERFAMILY Retrovirus zinc finger-like domains 560 581 IPR036875 GO:0003676|GO:0008270
Lele30g0427 602 ProSiteProfiles Zinc finger CCHC-type profile. 561 576 IPR001878 GO:0003676|GO:0008270
Lele30g0427 602 Pfam Zinc knuckle 560 576 IPR001878 GO:0003676|GO:0008270
Lele30g0427 602 CDD DEADc_DDX41 168 373 IPR044113 GO:0000398|GO:0003724|GO:0005524
Lele30g0427 602 Gene3D - 126 376 IPR027417 -
Lele30g0427 602 SMART helicmild6 422 503 IPR001650 -
Lele30g0427 602 Pfam Helicase conserved C-terminal domain 396 503 IPR001650 -
Lele30g0427 602 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 383 543 IPR001650 -
Lele30g0427 602 Coils Coil 514 534 - -
Lele30g0427 602 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 112 543 - -
Lele30g0427 602 FunFam Probable ATP-dependent RNA helicase DDX41 124 373 - -
Lele30g0427 602 FunFam Probable ATP-dependent RNA helicase DDX41 382 544 - -
Lele30g0427 602 CDD SF2_C_DEAD 384 512 - -
Lele30g0427 602 SMART c2hcfinal6 560 576 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0427 Lele-ChrLele30 9269997 9272745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0427 145 542 Eukaryotic Initiation Factors Gene Family AT3G19760 30.769 2.07e-56 194