Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0387 ATGACTGATTCATGGGTTCCTTATGGGCAAGGCCATCACTTTCACCACCCAACTGCTGGCGTCATCAAGAGGGTTCGATTGGAGAACTTCATGTGCCATAGCAACCTCGAGATTGAGCTTGGAGAGTGGGTCAATTTCATTACTGGTCAAAATGGAAGTGGTAAGAGCGCGATCCTAACTGCATTGTGTGTTGCATTTGGATGTCGAGCAAGAGGGACTCAGAGAGCAGCGACCCTGAAGGATTTTATAAAAACTGGCTGCAGTCATGCTGTCATCCATGTAGAAATAAAAAATGAAGGAGAGGATGCTTTTAAGCCCCAAATATATGGTGATACAATCATATTAGAACGTAGGATATCTGAATCTACAGGCTCCATAGTGTTAAAAGACTATAAAGGAAAGAAGGTTGTTAGCCAGAAAGCAGAACTCCAGGAAATGGTTGAGCATTTTAATATTGATGTAGAGAATCCATGTGTAATTATGAGTCAAGACAAAAGCAGGGAATTTTTGCATTCAGGGAATGACAAGGATAAATTTAAGTTCTTTTACAAGGCTACACTTCTTCAGCAAGTTGATGATCTTTTGGAAAGCGTTTCTAGAGGATTAGAGCATTCGTTTGGACTTCTTGGAGGATTAGAGGCTACAATAAGGCCTGTAGAGAAGGAGCTTAATGAGTTAAGAGTCAAAATTACAAACATGGAACAAGTTGAACAAATATCACTGCAGATTCAGCAGTTAAAGAAAAAGCTTGCGTGGTCATGGGTTTATGATGTGGACAAACAAATCCAGCAACAATGTTCAAAGATTGATAAATTAAAGGATCGAATACCTAAGTGCCAAGCCAAAATTGATGAGCAAATGAATCTGATTGAAGAATTGATGGCATGTTTACATAAGAAGAAAATTCATATAAAAAACTTGTTTGAAAAGACATCTGAAGTCAAGCAGAAGAAGCAGAATTTACAACAATCTATATCTATGGCTGCAAAAGAAGTACTTGAAAAAGAACAAGAGTGCAAACGCATAACTGTCAGTATTGAGAAGATGGTAAAGCGTATTAGGACTCTCGAAGAACAGGTGCAGGATATTTATGAGAAGCACTCACATAGTACTCAGGCTGAAGAATCTGAGATAGAGGAGATACTGAAGGTGCTCCAAAATGAGGTTGATACTGCTGAATCAGCCCTGACAAGGTTGAGGGAAGAGGAAGCTATGCTAGCTGACAATGTACAAAGACAAAGTGATGAAATAAGAAAGATTGCTCATGAGATTGAAGGACACGACAGGCGGTATCGCGATATCAACTTTCACATCCGTGAGCTTAAACAACACCAAACCAATAAGGTTACAGCTTTTGGAGGAGATAGAGTGATGAACCTACTACGTATTATTGAGAGAAGCTATCGGAGGTTTAAGAGGCCACCTATTGGTCCAATTGGTTCCCATCTGAACCTGGTTAATGGAGATAAGTGGGGTGTTGCTATTGAGCATGCAATTGGGAAGATGCTGAATGCTTTTATAGTGACTGATCACAAGGATTCTCTTCTTTTGAGAGAATGTGCAAAGGAAGCAAACTATGGTCACCTCCAAATTTTTATTTATGATTTTTCAAGACCACGATTGTCTTTACCAGCACACATGCTTCCCCAGACAACACATCCTTCCATTTTTTCAGTTTTACATTCGGCGAATGACACTGTGATTAATGTCTTAGTGGATCTGGGGAGCATTGAGAGGCAAATTCTTGTTAGGGATTATGATACTGGTAAAATGGTTGCATTTGACCAAAGGATTTCAAATCTGAAGGAGGTCTTCACCTCAGATGGATATAAAATGTTTTCTCGGGGCTCAGTGCAGACAGTTCTTCCCCCGAATAAGAGGCAGAGAACTAGCCGACTATGTAGTTCCTTTGATAATCAAATTAATGTTCTTGAAGCTGATGCTTCCCACGAACAAGAAGCAGCTAATAACATGAAGAGAACTAAAAGGGAGGCTGAAGAAAAGCTTGAGGATCTTGATAGGAAGCTAAGACATGTAAAGAGGCTTTGTTCAAATGCAGAGAAGGATTTGACTTCTAAAAAATTAGCATTCGAAGATGAGAAGAACCAGTATGCGATGGCAAAGGTGGCAAATCATTCATCACCTGTATCATCTGTGGATGAGATTCAACAAGAAATTTCTGAAGTCCAACACGAAATACAAAAGAAGAAAGACTTATTGAAAGAATGTCAGAACAAGATGGATGAAGTAGCAGCAAAGACGGATCATCTTAAAATATCATTTGAAGAACTATGTGCATCCACACAAGAGGATATCATTGCCCTTGAGAAAGCAGAGAATGAACTAATGCAGATTGAACGGGACATGCGTTCAGCAGAAGAGGAGAAGGTTCATTATGATGGGATCATGCAACGCAAGGTACTCCCAGATATCAAGGAGGCAGAGTCACGCCATATGGAGCTTAAGCAGCAACGAGAGGAATACAGCAGAAAGGCTTCTATAATTTGTTGTGAGGATGAACTTCATCCTTTAGGAGGTTGCGACGGAAGTACCCCAGAGCAACTCAGCGCACATATAGAAAGACTATCTCAGAGACTCAAGCGTGAGAGCCAAAGATGCACAGAATCACTAGATGATCTTAGGACGCTGTGTGAGAAAAAAGAACGCAAGATTATGAGAAAGCAGAAAACTTACAAAGCCTATCGAACAAAGTTGGATGCTTGTCAGAGAGCCTTAGAATTACGAAGGAACAAGTTTCACAGAAATGCAACTTATTTGAAGCGTTTGTTGTCTTGGAAATTTAATGCCCATTTGGGAAGAAAAGGATTCAGTGGACATATCACCGTCAATTATGAAGAAAAAACCCTTTCAATCAAGGTGCAAATGCCTCAAGATGCATCAGGATGTGCTGTTCGTGACACTCGAGGCCTTTCAGGTGGGGAGCGTTCGTTTTCAACGTTATGTTTTGCACTAGCCCTTCATGATATGACAGAATCCCCTTTCCGCGCCATGGATGAATTTGATGTTTTTATGGATGCCGTCAGTCGAAAGATCAGCTTGGACACTCTAGTGGACTTTGCTGTGGAACAAGGATCCCAGTGGATATTTATTACCCCACATGATATTGGTATGGTTAAGCAGGGAAACAGGATAAAGAAGCAGCAAATAGCAGCTCCCCGTTCTTGA 3186 0.4058 MTDSWVPYGQGHHFHHPTAGVIKRVRLENFMCHSNLEIELGEWVNFITGQNGSGKSAILTALCVAFGCRARGTQRAATLKDFIKTGCSHAVIHVEIKNEGEDAFKPQIYGDTIILERRISESTGSIVLKDYKGKKVVSQKAELQEMVEHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFYKATLLQQVDDLLESVSRGLEHSFGLLGGLEATIRPVEKELNELRVKITNMEQVEQISLQIQQLKKKLAWSWVYDVDKQIQQQCSKIDKLKDRIPKCQAKIDEQMNLIEELMACLHKKKIHIKNLFEKTSEVKQKKQNLQQSISMAAKEVLEKEQECKRITVSIEKMVKRIRTLEEQVQDIYEKHSHSTQAEESEIEEILKVLQNEVDTAESALTRLREEEAMLADNVQRQSDEIRKIAHEIEGHDRRYRDINFHIRELKQHQTNKVTAFGGDRVMNLLRIIERSYRRFKRPPIGPIGSHLNLVNGDKWGVAIEHAIGKMLNAFIVTDHKDSLLLRECAKEANYGHLQIFIYDFSRPRLSLPAHMLPQTTHPSIFSVLHSANDTVINVLVDLGSIERQILVRDYDTGKMVAFDQRISNLKEVFTSDGYKMFSRGSVQTVLPPNKRQRTSRLCSSFDNQINVLEADASHEQEAANNMKRTKREAEEKLEDLDRKLRHVKRLCSNAEKDLTSKKLAFEDEKNQYAMAKVANHSSPVSSVDEIQQEISEVQHEIQKKKDLLKECQNKMDEVAAKTDHLKISFEELCASTQEDIIALEKAENELMQIERDMRSAEEEKVHYDGIMQRKVLPDIKEAESRHMELKQQREEYSRKASIICCEDELHPLGGCDGSTPEQLSAHIERLSQRLKRESQRCTESLDDLRTLCEKKERKIMRKQKTYKAYRTKLDACQRALELRRNKFHRNATYLKRLLSWKFNAHLGRKGFSGHITVNYEEKTLSIKVQMPQDASGCAVRDTRGLSGGERSFSTLCFALALHDMTESPFRAMDEFDVFMDAVSRKISLDTLVDFAVEQGSQWIFITPHDIGMVKQGNRIKKQQIAAPRS 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0387 1061 Coils Coil 304 366 - -
Lele30g0387 1061 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 1051 IPR027417 -
Lele30g0387 1061 Coils Coil 375 416 - -
Lele30g0387 1061 SUPERFAMILY Smc hinge domain 458 616 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Lele30g0387 1061 Coils Coil 811 831 - -
Lele30g0387 1061 Coils Coil 859 904 - -
Lele30g0387 1061 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 17 1060 - -
Lele30g0387 1061 Coils Coil 641 689 - -
Lele30g0387 1061 Gene3D - 22 273 IPR027417 -
Lele30g0387 1061 CDD ABC_SMC6_euk 22 176 - -
Lele30g0387 1061 Coils Coil 269 289 - -
Lele30g0387 1061 CDD ABC_SMC6_euk 965 1061 - -
Lele30g0387 1061 Coils Coil 719 753 - -
Lele30g0387 1061 Pfam RecF/RecN/SMC N terminal domain 22 1051 IPR003395 -
Lele30g0387 1061 Gene3D - 783 1056 IPR027417 -
Lele30g0387 1061 Coils Coil 768 795 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0387 Lele-ChrLele30 8718691 8751857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0387 19 1061 Structural Maintenance of Chromosomes family AT5G61460 61.074 0.0 1246