Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0379 ATGCTTCCGGTTCTTTCTTCTCTTCTAACGCTGAACCCAAACCCTAACCCTAGCTGTGCGATTCTTTCCATGGATGCTCTTGAATCGAACCCTAATCCTCCTCCCTTCCTTCCGTCCGAAACAATCGCTTCGTACGATCATAACCCTACTCATCCGCCGCTTGAGAACTTTGCATCAGATTTCCAGAAGCCATATGAGCATACGGCGAATTTCGATTATCAAAATTCTTCGAAAACCCTAGCTTCGGATGGCCAAAACTTTAGCGGTCAACCCCAATCTGCTACTGGGAATGGCCACGAGAACGGACTCGATAACAGTCATGGCGGTGCCGATAGCAATAGTAATTCGAAGCCTTTGAGTGTGAGGCCATTGATTTCTGAAAACGCTGGGACCAATAATACCCAGAGTGGCACCGACAAGGATCACTCTGGTGGGGAAGAGGAAACTACAAGCAAACGTCGCCGCCGGAGTCGATGGGACCCGCAACCTGATTCCAATGACCAGAGTGGCGGTGAAGCCGGTGGCGGAACAAAGAAGAGGAAGTCACGGTGGGCCGATGATGAGCCGAAGCCGGTGATTCAGCTTCCCGATTTCATGGGCGGTATTGAGTTTGATCCTGAAATTCAAGCTTTGAATAGTAGGCTTCTTGAGATTAGTCGAATGCTGCAATCAGGTCTGCCTCTTGATGATCGCCCTGAAGGTGCTAGATCTCCTTCACCTGAACCTATATATGATAACATGGGGATTAGAATTAACACTAGAGAATATCGTGCCCGTGAAAGATTGCAAAAGGAGAGGCAAGAAATCATTTCTCAGATTATCAAGAAAAACCCCGCATTCAAGCCACCCGCAGATTATAGGCCTCCAAAGCTTCACAAGAAGCTATATATACCAATGAAAGAATATCCCGGTTACAACTTTATAGGACTTATTATTGGCCCTCGAGGCAACACACAGAAGCGGATGGAAAGAGAAACTGGTGCTAAAATTGTGATTCGGGGTAAAGGTTCAGTGAAAGAGGGTAGACTGCAACAGAAGAGGGATTTGAAACCTGACCCTTCAGAGAATGAAGATTTGCATGTCCTTGTGGAGGCGGATACACAAGAATCACTTGATGCTGCCGCAGGTATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTCTTGAATGAGCATAAGAGGCAGCAGCTTAGGGAACTTGCGGCCTTGAATGGTACAATTAGGGACGAAGAATATTGCCGGCTGTGTGGTGAACCTGGCCATCGCCAATATGCATGTCCTACGCGTACTTCTACATTCAAGAGTGAAGTGGTCTGTAAGCACTGTGGGGATGGTGGCCACCCAAGCATAGATTGTCCAGTGAAGGGAGCCACTGGCAAGAAGATGGATGACGAGTATCAGAACTTCTTAGCAGAGCTGGGAGGGACAGTTCCAGAGTCAGCAATAAAGCAGAACCCCACGTTGGCAATTGGTTCAGGCAATTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTGGATCGACAGGTGGTACATCAACACCTGGCTTAGGGTCTAATCCGGTTAAAAAGGAAATTGATGATACAAATTTGTATATTGGGTATTTACCGCCCACCCTTGATGATGATGGTCTGATCCAATTGTTTCAACAATTTGGTGAGATTGTTATGGCAAAGGTTATAAAAGACCGGATGACAGGTTTGAGTAAAGGATATGGGTTTGTCAAGTATGCTGATGTCCAAATGGCGAATAATGCAATTATGGCCATGAATGGCTATCGCCTTGAGGGTAGAACCATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTACTGTGCCTCCTGGCCCGCCAGCATCAGCCATGCCCACATATCCTATTTCAAGCCAGCCAGTTGGTGCCTATCCATCCCAACAATATGCTGCTGGTGGTCCTCTTGGTGCCGCACCCCCTACCCCTGGAAGTTATGCCGGTGCCCCAGTTCCATGGGGACCTCCTGTTCCTCCACCGTATGCTCCTTATGCTCCTCCCCCTCCTGGATCAACTATGTACCCTCCCCCTCCTCCATATGGTGTTCAGTATCCTCCAGTCCAGACAGCCCCTCCAGGTGCCCCATCCCAGCCTGCAACTTCTAGTGAATCACAGCAGAGTTTTCCTCCAGGAGTGCAGTCTGACAGTAGTACCTCTACTCAATCTACATCGGCCAACATTTATGGGAGTTCAATGCCACCAACTGCTCAACCTACATATGCATCTTATGGTTATCCACCTTACTATGGTGCAGTTCCCCCTCCACCTCCCCCACCTGCCCCTGCACCTATCCGGACTTCAGACCATATGCACTGGACTACCAATCCTTCAGTGCCACCTCCTGCAGAAAAGACAACATATGGTGCAGATCAATCTCAGAGCATAGGAAATATTCAGAGTATGAGAAGTTCATGGCAGAGATGA 2451 0.4855 MLPVLSSLLTLNPNPNPSCAILSMDALESNPNPPPFLPSETIASYDHNPTHPPLENFASDFQKPYEHTANFDYQNSSKTLASDGQNFSGQPQSATGNGHENGLDNSHGGADSNSNSKPLSVRPLISENAGTNNTQSGTDKDHSGGEEETTSKRRRRSRWDPQPDSNDQSGGEAGGGTKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLHKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEADTQESLDAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESAIKQNPTLAIGSGNSGSNPPWANNSGSTGGTSTPGLGSNPVKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADVQMANNAIMAMNGYRLEGRTIAVRVAGKPPQPTVPPGPPASAMPTYPISSQPVGAYPSQQYAAGGPLGAAPPTPGSYAGAPVPWGPPVPPPYAPYAPPPPGSTMYPPPPPYGVQYPPVQTAPPGAPSQPATSSESQQSFPPGVQSDSSTSTQSTSANIYGSSMPPTAQPTYASYGYPPYYGAVPPPPPPPAPAPIRTSDHMHWTTNPSVPPPAEKTTYGADQSQSIGNIQSMRSSWQR 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0379 816 ProSiteProfiles Type-1 KH domain profile. 306 378 - -
Lele30g0379 816 MobiDBLite consensus disorder prediction 76 139 - -
Lele30g0379 816 Pfam KH domain 306 354 IPR004088 GO:0003723
Lele30g0379 816 ProSiteProfiles Zinc finger CCHC-type profile. 439 453 IPR001878 GO:0003676|GO:0008270
Lele30g0379 816 MobiDBLite consensus disorder prediction 336 356 - -
Lele30g0379 816 Gene3D - 502 611 IPR012677 -
Lele30g0379 816 Gene3D - 411 464 - -
Lele30g0379 816 FunFam splicing factor-like protein 1 283 411 - -
Lele30g0379 816 MobiDBLite consensus disorder prediction 140 162 - -
Lele30g0379 816 CDD SF1_like-KH 292 408 - -
Lele30g0379 816 MobiDBLite consensus disorder prediction 31 58 - -
Lele30g0379 816 Pfam Splicing factor 1 helix-hairpin domain 180 287 IPR032570 -
Lele30g0379 816 SUPERFAMILY RNA-binding domain, RBD 524 618 IPR035979 GO:0003676
Lele30g0379 816 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 291 417 IPR036612 GO:0003723
Lele30g0379 816 SMART rrm1_1 529 602 IPR000504 GO:0003723
Lele30g0379 816 MobiDBLite consensus disorder prediction 703 747 - -
Lele30g0379 816 MobiDBLite consensus disorder prediction 227 246 - -
Lele30g0379 816 Gene3D K Homology domain, type 1 288 410 IPR036612 GO:0003723
Lele30g0379 816 MobiDBLite consensus disorder prediction 486 521 - -
Lele30g0379 816 MobiDBLite consensus disorder prediction 606 626 - -
Lele30g0379 816 MobiDBLite consensus disorder prediction 685 816 - -
Lele30g0379 816 PANTHER RNA-BINDING PROTEIN RELATED 144 650 IPR045071 -
Lele30g0379 816 SMART kh_6 291 383 IPR004087 GO:0003676
Lele30g0379 816 Gene3D - 205 283 - -
Lele30g0379 816 MobiDBLite consensus disorder prediction 685 702 - -
Lele30g0379 816 MobiDBLite consensus disorder prediction 777 816 - -
Lele30g0379 816 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 528 606 IPR000504 GO:0003723
Lele30g0379 816 SMART c2hcfinal6 412 428 IPR001878 GO:0003676|GO:0008270
Lele30g0379 816 SMART c2hcfinal6 438 454 IPR001878 GO:0003676|GO:0008270
Lele30g0379 816 FunFam splicing factor 1 411 464 - -
Lele30g0379 816 MobiDBLite consensus disorder prediction 486 518 - -
Lele30g0379 816 MobiDBLite consensus disorder prediction 174 190 - -
Lele30g0379 816 MobiDBLite consensus disorder prediction 757 773 - -
Lele30g0379 816 ProSiteProfiles Zinc finger CCHC-type profile. 413 427 IPR001878 GO:0003676|GO:0008270
Lele30g0379 816 SUPERFAMILY Retrovirus zinc finger-like domains 409 455 IPR036875 GO:0003676|GO:0008270
Lele30g0379 816 MobiDBLite consensus disorder prediction 76 194 - -
Lele30g0379 816 MobiDBLite consensus disorder prediction 607 623 - -
Lele30g0379 816 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 530 599 IPR000504 GO:0003723
Lele30g0379 816 FunFam splicing factor-like protein 1 508 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0379 Lele-ChrLele30 8607485 8610005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0379 529 691 Eukaryotic Initiation Factors Gene Family AT1G34140 31.792 1.18e-11 65.9