Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0375 ATGGCTTCAATCATTGTTAAGCTTTTCTTTTCCCTCTCTTTATGCTCTTCACTTCTCTCAATATCATCATCATCACCTTCTTCTTCTTCTTCATCTTCATCTATAGATTTCTGGTGTAACCAAACTCCTCACCCTGAGCCATGCAAATACCACATGAACCAGAACAGTCACGACCGGTTCAGACGGAAACATCCGTCAGAATTCAGTAAAATGCTGGTTCAATCAGCACTGAACCATACCCAAGCAATGCATAAGGAAGCTCAAGAATATGGCCCTAAATGTGTGACCAAGATGCAGAAATGTGTGTTCAGTGATTGTTTAAAGCTGTATGACAACACAATCTTCCATCTAAACCGAACCCTTCGGGCCCTACACACTTCTTCTTGCTCGCTTTCAGACGCACAAACATGGCTCAGCACTGCCCTCACTAACATTGAAACTTGCCGGAGCGGCATGTTGCCGCACGGAATCGTCAGAGAGTTTACAGATCCAAATAATGCGAGTGACAACGTTAGGAAGATGCTAAGCAATGTGTTAGCTGTAAATGGGAAGATTCTGAAGCAAGAGAATTACAGTACAGAAGAAGAAGAGATCAAAGCGCATGGTTTTCCAGGCTGGTTTTCTCGGCATGACCGGAGGTTGTTGAGCTTGAAGCGATCGTCGGTGAAGGCACATCTTGTGGTGGCTCAAGATGGGACGGGGCATTTCAAGACGGTGCAAGCAGCCATTGATGTAGCGGCAAGGAGAAGAGTGAAGACGAGGTTTGTGATAAGAGTGAAGAAAGGGATATATGAAGAGAACATTGAAGTTGATAAGGATAATGAAAATCTCATGATTGTTGGAGATGGCACCAGACTCACCATTATTACTGGCAGTAGAAGCGTGAAAGACGGAATTACCCCGGCTAGCTCCGCAACAGCAGGTGTAGATGGTGCTCATTTCATTGCACGAGACATCACTTTCAGAAACACGGCCGGTCCCGAAAAAGGCCAAGCGGTGGCTCTCCGATCAGCCTCCGACCTCTCTGTCTTCTACCGGTGTTCCATCGAAGGCTACCAAGACACACTAATGGCTCATGCACAACGTCAATTCTATAGGGACTGTAGAATCTTCGGTACAGTGGATTTCATATGGGGCAATGCCGCAGTTGTTCTACAAAACTGCAGAATTCTCGTAAGAAAGCCACTTGAAGGACAAGCCAACATGATCACAGCACAAGGACGAGGCGACCCGTTTCAGAACACCGGAATATCGATCATCAATTCTCAGATTCGAGCGGCGCCAGATTTCAGGAAGGTTTCAAAGTCGTTTGAGACCTATTTGGGTCGGCCATGGCAGCAATATGCAAGAGTGGTTGTCATGAAGACTTACATTGAAGGACTGGTGAATCCTAAGGGGTGGTCTCCATGGGGTGAAAGTGACAATTTTGCTCAAGATACGGGCTATTTTGGGGAATATATGAACTTTGGGGCAGGTTCGTCAACAAAAAGTAGGGTACAATGGAGTGGATTTCATGTTATAAGTAATCCAAATGAGGCAAACCAGTTCAGCGTTGCTGCTTTCCTTGCTGGTCGCACATGGTTGCCTCGCACTGGGGTCCCTTTTAGTAATGGTGTTTAA 1620 0.4599 MASIIVKLFFSLSLCSSLLSISSSSPSSSSSSSSIDFWCNQTPHPEPCKYHMNQNSHDRFRRKHPSEFSKMLVQSALNHTQAMHKEAQEYGPKCVTKMQKCVFSDCLKLYDNTIFHLNRTLRALHTSSCSLSDAQTWLSTALTNIETCRSGMLPHGIVREFTDPNNASDNVRKMLSNVLAVNGKILKQENYSTEEEEIKAHGFPGWFSRHDRRLLSLKRSSVKAHLVVAQDGTGHFKTVQAAIDVAARRRVKTRFVIRVKKGIYEENIEVDKDNENLMIVGDGTRLTIITGSRSVKDGITPASSATAGVDGAHFIARDITFRNTAGPEKGQAVALRSASDLSVFYRCSIEGYQDTLMAHAQRQFYRDCRIFGTVDFIWGNAAVVLQNCRILVRKPLEGQANMITAQGRGDPFQNTGISIINSQIRAAPDFRKVSKSFETYLGRPWQQYARVVVMKTYIEGLVNPKGWSPWGESDNFAQDTGYFGEYMNFGAGSSTKSRVQWSGFHVISNPNEANQFSVAAFLAGRTWLPRTGVPFSNGV 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0375 539 SUPERFAMILY Pectin lyase-like 222 538 IPR011050 -
Lele30g0375 539 FunFam Pectinesterase 219 539 - -
Lele30g0375 539 Pfam Pectinesterase 226 524 IPR000070 GO:0030599|GO:0042545
Lele30g0375 539 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 185 IPR035513 -
Lele30g0375 539 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 184 IPR006501 GO:0004857
Lele30g0375 539 Gene3D Invertase/pectin methylesterase inhibitor family protein 13 185 IPR035513 -
Lele30g0375 539 PANTHER PECTINESTERASE 17 529 - -
Lele30g0375 539 SMART PMEI_2 30 181 IPR006501 GO:0004857
Lele30g0375 539 Pfam Plant invertase/pectin methylesterase inhibitor 34 180 IPR006501 GO:0004857
Lele30g0375 539 CDD PMEI-like_3 38 187 - -
Lele30g0375 539 Gene3D - 219 539 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0375 Lele-ChrLele30 8554401 8556134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0375 21 539 Carbohydrate Esterase AT3G47400 53.484 0.0 578