Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0374 ATGGCATCAATCATTGTTAAGCTTTTCTTCTCACTTGCATTATTTTCTTCTCTTTTCTCAATATCATCATCTTCTTCTTCAAGAAAATTATCTTCATCTATAGATTTTTGGTGCAATCAAACTCCTCATCCTGAGCTTTGTAAATACCACATGAGCCAGAACCATTACCGGTTCGGACCGAACCACCGGTTCGAGTTCAGGAAAATGCTGGTTCAGGTAGCCATGGAACAAGCTCAAGCTGTGCATAAGCAAGCACAAGAGTATGACCCAAAATTTGAGACCACAACGCAGAAATTTGTGTTCAATGATTGTTTAAAGCTCTATGACAACACCATCTTCCATCTAAACCGTACCCTTCAAGCCCTACACACTTCTTCTTGCTCGCTTTCAGACGCACAAGCATGGCTCAGCACTGCCCTCACAAACATCGAAACTTGCCGGAGTGGCGTGTTGCAGCTCGGGTTCGGAGAGTTCACGGCTCAAAATAATACGAACCACCACAATGTTAGGAAGATGATAAGCAATGTGTTAGCTGTGAATGGGAAGTTTCTGAAGCAAGAGAATTACACAGAGAAAGAGATCAAACCACATGGTTTTCCGAGTTGGTTTTCTGGGCATGAAAGGAGATTGTTGAGCTTGAGTTCATCTTCTTTGAAGGCTAATCTTGTGGTGGCTCAAGATGGTACCGGCCATTTTAAGACGGTGCAAGCCGCCATTGATGAAGCTTCCAGGAGAACAGTGAAGAATAGGTATGTGATAAGAGTGAAGAACGGGGTTTATGAAGAGAATATTGAAGTTGATAAGAATAATGAAAATCTCATGATTGTTGGAGATGGAATGGGAAGTACCATTATAACTGGAAATAGAAGCGTTAAAGATGGAATTACTCCTTCTATGTCTGCAACAGTTGGTATAGATGGGGCTCACTTCATTGCACGAGACATCACTTTCAGAAACATGGCGGGTCCCGAAAAAGGTCAAGCGGTGGCTCTCCGATCAGCCTCCGATCTCTCAGTCTTCCATCGGTGCTCCATCGAAGGCTATCAGGACACTCTAATGGCTCATGCACAACGTCAATTCTATAGAGACTGTAGAATCTTCGGCACAGTTGATTTCATTTGGGGCAACGCCGCAGTTGTTCTACAAAACTGCACCATTGTCGTAAGAAAGCCGTTACAAGGACAAGAAAACATGGTCACGGCACAAGGACGAGGCGACCCATTTCAGAACACCGGAATATCAATAATCAATTCCCAAATCCGAGCCGCGCCGGATCTCAGTTCGGTTGTCAACTCGTATAAAACTTATTTGGGTCGGCCATGGCAACAATATGCAAGAGTGGTTGTCATGAAAAGCTACATTGAAGGATTGGTGAATCCTAAGGGCTGGTCTCCATGGGGCGAAAGTGATAATTTTGCTCAAGATACGTGCTATTTTGGGGAATATATGAACCATGGGGCTGGTTCTTCAACAAAAGATAGGGTTCAATGGCCTGGTTTTCATGTTATGACGAACCAGAATGATACAGATCAGTTTACTGTTGATGGTCTTCTTTCTGGTAACACATGGTTGCCTCACACCGGTGTGCCTTTTGATATTGGTATTTAA 1608 0.4353 MASIIVKLFFSLALFSSLFSISSSSSSRKLSSSIDFWCNQTPHPELCKYHMSQNHYRFGPNHRFEFRKMLVQVAMEQAQAVHKQAQEYDPKFETTTQKFVFNDCLKLYDNTIFHLNRTLQALHTSSCSLSDAQAWLSTALTNIETCRSGVLQLGFGEFTAQNNTNHHNVRKMISNVLAVNGKFLKQENYTEKEIKPHGFPSWFSGHERRLLSLSSSSLKANLVVAQDGTGHFKTVQAAIDEASRRTVKNRYVIRVKNGVYEENIEVDKNNENLMIVGDGMGSTIITGNRSVKDGITPSMSATVGIDGAHFIARDITFRNMAGPEKGQAVALRSASDLSVFHRCSIEGYQDTLMAHAQRQFYRDCRIFGTVDFIWGNAAVVLQNCTIVVRKPLQGQENMVTAQGRGDPFQNTGISIINSQIRAAPDLSSVVNSYKTYLGRPWQQYARVVVMKSYIEGLVNPKGWSPWGESDNFAQDTCYFGEYMNHGAGSSTKDRVQWPGFHVMTNQNDTDQFTVDGLLSGNTWLPHTGVPFDIGI 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0374 535 CDD PMEI-like_3 37 185 - -
Lele30g0374 535 Pfam Pectinesterase 221 521 IPR000070 GO:0030599|GO:0042545
Lele30g0374 535 FunFam Pectinesterase 215 535 - -
Lele30g0374 535 Pfam Plant invertase/pectin methylesterase inhibitor 33 178 IPR006501 GO:0004857
Lele30g0374 535 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 183 IPR035513 -
Lele30g0374 535 SMART PMEI_2 29 179 IPR006501 GO:0004857
Lele30g0374 535 Gene3D - 215 535 IPR012334 -
Lele30g0374 535 SUPERFAMILY Pectin lyase-like 217 534 IPR011050 -
Lele30g0374 535 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 184 IPR035513 -
Lele30g0374 535 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 181 IPR006501 GO:0004857
Lele30g0374 535 PANTHER PECTINESTERASE 15 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0374 Lele-ChrLele30 8547343 8549525 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0374 31 531 Carbohydrate Esterase AT5G51500 53.755 0.0 548