Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0372 ATGGCATTAATCATTGTTAAGCTTTTCTTTTCCCTCACTTTCTTTTCTTCACTTCTCTTAGTATCTTCTTCGTCTTCTTCATATATAGATTTCTGGTGTAACCAAACTCCTCACCCTGAGCCATGCAAATACCACATGAGCCAGAACAGTCACCACCAATTCAGACCGTACCATCCGTCAGAGTTCAGGAAAATGCTGGTTCACTTAGCACTGAACCAAACCCAAGCCATGCATAAGGAAGCTCAAGAACATGCCCCGAAATGTGTGACCAAGATGCAGAAATGTGTGTTCAGTGATTGTTTAAAGCTCTATGACAACACCATCTTCCATCTCAACCGAACCCTTCAAGCCCTACTAGAGGCTTCTTGCTCGCTTTCAGATGCACAAACATGGCTCAGCACTGCCCTCACTAACATCGAAACCTGCCAGAGCGGCGTGTTGCAGCACGGAATCGTCTCTCCAAATAATAAGAGCAACAACGTTAGAAAGATGATAAGCAATGTGTTAGCTGTGAATGGGAAATTTCTGAAGCAAGAGAATTACAGTACAGAAGAAGATATCAAATCACATGGTTTTCCCAGCTGGTTTTCTCGGCATGACCGGAGGTTGTTGAGCTTGAGGCGATCGTCAGTGAAGGCACATCTGGTGGTGGCTCAAGACGGGACGGGGCATTTCAAGACGGTGCAAGCGGCCATTGATCTTGCAGCAAGGAGAAGAGTGAAGACGAGGTTAGTGATAAGGGTGAAGAAAGGGATATATGAAGAGAACATTGAAGTTGATAAGGATAATGAAAATCTTATGATTGTTGGTGATGGAACCAGACTCACCATTATAACTAGCAGTAGAAGTGTGAAAGATGGAATTACACCCGCCAGCTCCGCAACAGCAGGTATAGATGGTGCTCACTTTATTGCACGAGACATCACTTTCAGAAACACGGCCGGTCCCGAAAAAGGCCAAGCGGTGGCTCTCCGATCAGCCTCCGACCTCTCTGTCTTCTACCGGTGTTCCATCGAAGGCTACCAAGACACACTAATGGCTCATGCACAACGTCAATTCTATAGAGACTGTAGAATCTTCGGTACAGTGGATTTCATATGGGGCAATGCCGCAGTTGTTCTACAAAACTGCAGAATTCTCGTAAGAAAGCCACTTGAAGGACAAGCCAACATGATCACAGCACAGGGACGAGGCGACCCGTTTCAGAACACCGGAATATCGATCATCAATTCTCAGATTCGAGCGGCGCCAGATTTCAGGAAGGTTTCAAAGTCATTTGAGACCTATTTGGGTCGGCCATGGCAGCAATATGCAAGAGTGGTTGTCATGAAGACTTACATTGAAGGACTGGTGAATCCTAAGGGGTGGTCTCCATGGGGTGAAAGTGATAATTTTGCTCAAGATACGGGCTATTTTGGGGAATATATGAACTTTGGGGCAGGTTCGTCAACAAAAAGTAGGGTACAATGGAGTGGGTTTCATGTTATAAGTAATCCAAATGAGGCAAACCAGTTCAGCGTTTCTGCTTTCCTTGCTGGTCGCACATGGTTGCCTCGCACTGGGGTCCCTTTTAGTAATGGTGTTTAA 1587 0.4568 MALIIVKLFFSLTFFSSLLLVSSSSSSYIDFWCNQTPHPEPCKYHMSQNSHHQFRPYHPSEFRKMLVHLALNQTQAMHKEAQEHAPKCVTKMQKCVFSDCLKLYDNTIFHLNRTLQALLEASCSLSDAQTWLSTALTNIETCQSGVLQHGIVSPNNKSNNVRKMISNVLAVNGKFLKQENYSTEEDIKSHGFPSWFSRHDRRLLSLRRSSVKAHLVVAQDGTGHFKTVQAAIDLAARRRVKTRLVIRVKKGIYEENIEVDKDNENLMIVGDGTRLTIITSSRSVKDGITPASSATAGIDGAHFIARDITFRNTAGPEKGQAVALRSASDLSVFYRCSIEGYQDTLMAHAQRQFYRDCRIFGTVDFIWGNAAVVLQNCRILVRKPLEGQANMITAQGRGDPFQNTGISIINSQIRAAPDFRKVSKSFETYLGRPWQQYARVVVMKTYIEGLVNPKGWSPWGESDNFAQDTGYFGEYMNFGAGSSTKSRVQWSGFHVISNPNEANQFSVSAFLAGRTWLPRTGVPFSNGV 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0372 528 FunFam Pectinesterase 208 528 - -
Lele30g0372 528 SUPERFAMILY Pectin lyase-like 210 527 IPR011050 -
Lele30g0372 528 PANTHER PECTINESTERASE 15 518 - -
Lele30g0372 528 Gene3D - 208 528 IPR012334 -
Lele30g0372 528 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 176 IPR035513 -
Lele30g0372 528 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 175 IPR035513 -
Lele30g0372 528 SMART PMEI_2 24 171 IPR006501 GO:0004857
Lele30g0372 528 Pfam Plant invertase/pectin methylesterase inhibitor 28 170 IPR006501 GO:0004857
Lele30g0372 528 CDD PMEI-like_3 32 177 - -
Lele30g0372 528 Pfam Pectinesterase 215 513 IPR000070 GO:0030599|GO:0042545
Lele30g0372 528 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 171 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0372 Lele-ChrLele30 8524277 8526003 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0372 24 528 Carbohydrate Esterase AT3G47400 55.106 0.0 575