Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0290 ATGGTGTCTTCTGGAACTGGCCTTGTGCCCTTGTCATATGTAAAAGAAAATATTAATCTTGAGCTGGAAAAGTTGAGGACTGAATTAAGACATGCCCAAGGAATGCATGCAATAGCTCAAAGTGAGAACATTGATGCATCACGGAAGTTTGAAGGGAATGTTAAATACTAATGTGCTGAAAGAGAAGCTGAAGAAAGAAGAGACATGGAGACAAAAGCTATTCGTGCTGCGCAAGAGAAAGAAAAACTAGAGTCTTCTCTTACTGGTTTGACACCTCAGTACCATAAGTTTACATGGGACGAGATAGTGACTGCAACCTCATCTTTATCTGAAGATCTGAGAATCGGGATGGGAGCATATGGTACGGTGTACAAGTGTAATTTGCATCATACTGTTGTAGCTGTTAAAGTACTCCACTCTAAAGGGAGCCACAAAAGCAAGCAATTCCAACAGGAGTTATTGACAGAAAAACCAGCTATAGCACTCACTCACTTGGTAGAAACAGTAGTTGATGATGGAAAGCTTGAGGATATATTGGACTTGGAGGCAGGGAGTTGGCCACTTCAGGAGACAATGGACTTAGCTCGATTAGGCCTTAGCTGTACAGAACTTCTTCGTAAAGATCGACCAAATTTAGATCATGTGATTCCTGCACTGGAACTATTGAAAGAAGTTGCTGACAGAGCCCAAAGCTGTATTATTAGTGTTAAATCAAAGGCTCCAAGTCATTTTATTTGCCCAATACTCCAGGATGTGATGGATGATCCTTGTGTTGCTGCGGATGGAAACACGTACGATCGCAAAGCAATCGAAACGTGGCTTCAAGAGAACGACAAATCACTGATGAATAATATGGAACTTCCTCATAAGAATATAATCCCTAGTTACGCACTTCTATCAGCAATTATGGAGTGGAAATCTGGAGAAAAATGA 933 0.4094 MVSSGTGLVPLSYVKENINLELEKLRTELRHAQGMHAIAQSENIDASRKFEGNVKYXCAEREAEERRDMETKAIRAAQEKEKLESSLTGLTPQYHKFTWDEIVTATSSLSEDLRIGMGAYGTVYKCNLHHTVVAVKVLHSKGSHKSKQFQQELLTEKPAIALTHLVETVVDDGKLEDILDLEAGSWPLQETMDLARLGLSCTELLRKDRPNLDHVIPALELLKEVADRAQSCIISVKSKAPSHFICPILQDVMDDPCVAADGNTYDRKAIETWLQENDKSLMNNMELPHKNIIPSYALLSAIMEWKSGEK 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0290 310 SUPERFAMILY RING/U-box 238 306 - -
Lele30g0290 310 ProSiteProfiles U-box domain profile. 239 310 IPR003613 GO:0004842|GO:0016567
Lele30g0290 310 Gene3D Phosphorylase Kinase; domain 1 88 166 - -
Lele30g0290 310 PANTHER OS02G0152300 PROTEIN 24 152 - -
Lele30g0290 310 SMART Ubox_2 243 305 IPR003613 GO:0004842|GO:0016567
Lele30g0290 310 ProSitePatterns Protein kinases ATP-binding region signature. 115 136 IPR017441 GO:0005524
Lele30g0290 310 Coils Coil 15 42 - -
Lele30g0290 310 Coils Coil 59 86 - -
Lele30g0290 310 SUPERFAMILY Protein kinase-like (PK-like) 90 155 IPR011009 -
Lele30g0290 310 Pfam U-box domain 240 307 IPR003613 GO:0004842|GO:0016567
Lele30g0290 310 CDD RING-Ubox_WDSUB1_like 244 284 - -
Lele30g0290 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 238 310 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0290 Lele-ChrLele30 6432191 6436310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0290 152 310 U-box Gene Family AT5G61550 57.143 1.52e-58 199