Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0279 ATGGCTACTGCGAGGACTGTCAAGGATGTTTCGCCTCTCGAGTTCGTCAAGGCCTACGCGGCTCACCTGAAGAGATCCGGCAAGATGGAGCTTCCTGAGTGGACTGATTTAGTAAAGACTGCAAGATTTAAAGAATTGGCTCCATATGATCCTGATTGGTACTATGTTAGGGCTGCTTCCATGGCCAGAAAAATCTACTTGAGAGGGGGCCTTGGTGTTGGTGCTTTCCAGAGGATCTATGGTGGGAGCAAGAGGAATGGCAGCCGTCCTCGTCATTTTTGTAAGAGCAGCGGTGCTATTGCTCGTCACATTCTTCATCAGTTGCAGAACATGGACATTATTGAGGTCGACCACAATGGGTAA 363 0.4876 MATARTVKDVSPLEFVKAYAAHLKRSGKMELPEWTDLVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSKRNGSRPRHFCKSSGAIARHILHQLQNMDIIEVDHNG 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0279 120 Gene3D - 1 120 IPR036388 -
Lele30g0279 120 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Lele30g0279 120 Pfam Ribosomal protein S19e 6 117 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lele30g0279 120 FunFam 40S ribosomal protein S19 2 120 - -
Lele30g0279 120 SMART Ribosomal_S19e_2 6 119 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lele30g0279 120 PANTHER 40S RIBOSOMAL PROTEIN S19 2 120 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lele30g0279 120 SUPERFAMILY "Winged helix" DNA-binding domain 6 119 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0279 Lele-ChrLele30 5130157 5131569 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0279 1 120 Cytoplasmic Ribosomal Protein Gene Family AT5G61170 80.833 1.17e-73 214