Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0268 ATGAATATAGCAGCGCAGAGCCGCAGACAGAAAAAACAGAAGAAGAAGCAGCAGCAGCAGCCTGAAGCAGAAGCAGTCACCTATAAGAATGGATATCAAAATCCTCCTTTCTCACTTACGCCCGCCACATCATATAATGACAAAGAATCAATCAACCTAACCCACAAAATCTCTCAGAGCTCTCTCTCCCTCAATCCCACTGCACCACGATTTCAAATGAGCATGTTAGGCCTGCGAGACCTACTTCTCATAGCTCCAAATCTTTCTTCTCTTCACCAGCAGCAGCAGCAACAACAACCCCAACAACAGGACCATTCGAACCTTCATCATCTTCCTTCTTCTGCTTCTCTCAGCGTCGGTCTCGGGATTTTCCCTCTCCTCACTGCCACTCCTTGCGTCCCCAATGACCTCCCTCATGATTCCGCCGATCACAATCATCATCAGAATACTGCCAACAATTCCAATTTCTGGAACCTCAAGATGTGTCAAGCGGAAGTTGCGAATTCTTCTAAGAAAGGAGTGATCGATGTTGAAGGTGATGAGAATGGGATTTTTGGGGGTGATTTTAGGGTCTGTCAGGATTGTGGGAATCGCGCCAAGAAAGATTGTGGCTATAGACGATGCAGGACTTGTTGTAAGGGACGTGGGTACGATTGTAGCACTCATCTCAAGAGCACGTGGGTCCCTGCCGCTCGCCGCCGCGAGCGTCAGATGACCGTTGTTGCTGCTGCCGGAGCTGCTGGTGGTGGTGCTTCTGGGTCGCCTCCCGGTTCTAAGAGGCCTAGACCGTTCGGGTCTTCACAGAATGCCGCTACCACTTCTCATAGTTCTGCCTCTAACGCTACTACGCCAAGAAGTCTAGATACTAGCTCTTGTCACCAAGATGCTAGTTTCAAGCAGTCTTTACCTGGTCATGTTCGTGCTCCTGCGGTGTTCAGGTGCCATAGAGTTTCGGCTATTGGTAATGGGGAAGATGAGTTTGCGTACATGGCCACAGTTCATATCAGTGGCCATGTTTTCAAGGGGTTTCTGTATGATCAAGGTGCTAATGGGAAAAGCACAATCCCATGTGTTTCTGAACTTCAACTGGGAAATTATAGAAGTGAAAAGAATAGGGAATGTTCTTCTCCAATTGGTGTTCCAACTAATAATAATAATGCCTACCCTGCTTCTGGCTGTTGA 1182 0.4797 MNIAAQSRRQKKQKKKQQQQPEAEAVTYKNGYQNPPFSLTPATSYNDKESINLTHKISQSSLSLNPTAPRFQMSMLGLRDLLLIAPNLSSLHQQQQQQQPQQQDHSNLHHLPSSASLSVGLGIFPLLTATPCVPNDLPHDSADHNHHQNTANNSNFWNLKMCQAEVANSSKKGVIDVEGDENGIFGGDFRVCQDCGNRAKKDCGYRRCRTCCKGRGYDCSTHLKSTWVPAARRRERQMTVVAAAGAAGGGASGSPPGSKRPRPFGSSQNAATTSHSSASNATTPRSLDTSSCHQDASFKQSLPGHVRAPAVFRCHRVSAIGNGEDEFAYMATVHISGHVFKGFLYDQGANGKSTIPCVSELQLGNYRSEKNRECSSPIGVPTNNNNAYPASGC 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0268 393 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 191 233 IPR006510 -
Lele30g0268 393 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 302 348 IPR006511 -
Lele30g0268 393 MobiDBLite consensus disorder prediction 91 112 - -
Lele30g0268 393 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 9 378 IPR007818 GO:0003700|GO:0006355
Lele30g0268 393 MobiDBLite consensus disorder prediction 20 38 - -
Lele30g0268 393 MobiDBLite consensus disorder prediction 1 38 - -
Lele30g0268 393 MobiDBLite consensus disorder prediction 261 294 - -
Lele30g0268 393 MobiDBLite consensus disorder prediction 245 294 - -
Lele30g0268 393 Pfam Domain of unknown function (DUF702) 191 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0268 Lele-ChrLele30 3687123 3691068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0268 64 383 C2H2 Transcription Factor Family AT5G12330 43.252 1.04e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lele30g0268 DUF702 1.4e-56 No_clan