Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0254 ATGGATGAACTGGGAGAATTTGGGGAGAGGCCTATTTTCAGAGATATAAGACGCTATTTCTGTGAGTACTGTGGCATCTGTCGATCCAAAAAGACCCTGATTACCTCTCACATCAATTCTTGCCACAAGGAGGAGTTGGAAAGAGCCAGAGTTGAGAAAGATCATGAAGCCGGGAGCACAAAATCAAATACTTGCAAGGAATGTGGTGCTAGTTTCAAAAAACCAGCATATTTGGTGCAGCACATGCTAAGCCATTCTCTCGAGAGGCCATATAGGTGTTCTATTGATGACTGTCAAGCAAGTTATAGAAGAAAAGACCACTTGACTCGTCACCTTCTGCAGCATGAAGGGAAAACTTTTAAATGTCCAGTCAAGGATTGCAACCAGGATTTTGCTTTCCTAGGGAATATGACAAGGCATGTCAAAGAATTTCATAATGGGAATTCCACCCCTTCTAAAGTTGAAACTCAGAAGCAGTATGAATGCCCAGAAATTGGCTGTGGAAAGGTTTTCAAATATGCTTCAAAGCTACAGAAGCATGAAAATTGTCATGTTAAGCTGGACTCAATGGAGGTACTCTGCTTGGATCCTGGTTGCATGAAACATTTTACCAATGTCCAGTGCCTTAAAGCCCATGTCAAAACCTGTCATCAATTTGTCACCTGTGAGACTTGTGGGAAAAAGGAGCTGAAGAAGAATATCAAGCGGCACCTTCGGTCACATGAAACTAGTTCTTCATCAGAGGCATTTAAATGTGAATACAAGGGTTGTAGCAGCACGTTCACCAGGAAATCCAATCTTCATAAGCATGTAAAGGCTGCACACTTAAAAGAAAAACCATTTGTGTGTGGCTTCCCTGATTGTGGCATGAAATTTTCCTACAAACATGTGAGGGACAACCATGAAAAGACACACGTTTATACACATGGGGATTTTGAAGAATCTGACGAACAATTCAGGTCAAGGCCAAGGGGAGGGAGAAAGAGAAAGTGTCCTACAGTTGAAATGTTAGTTAGGAAAAGGGTCACCACTCCCAATCAATTGGAGCGCGTTTTGTTTGGAGAGGATACAGAGTAA 1077 0.4206 MDELGEFGERPIFRDIRRYFCEYCGICRSKKTLITSHINSCHKEELERARVEKDHEAGSTKSNTCKECGASFKKPAYLVQHMLSHSLERPYRCSIDDCQASYRRKDHLTRHLLQHEGKTFKCPVKDCNQDFAFLGNMTRHVKEFHNGNSTPSKVETQKQYECPEIGCGKVFKYASKLQKHENCHVKLDSMEVLCLDPGCMKHFTNVQCLKAHVKTCHQFVTCETCGKKELKKNIKRHLRSHETSSSSEAFKCEYKGCSSTFTRKSNLHKHVKAAHLKEKPFVCGFPDCGMKFSYKHVRDNHEKTHVYTHGDFEESDEQFRSRPRGGRKRKCPTVEMLVRKRVTTPNQLERVLFGEDTE 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0254 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 150 IPR013087 -
Lele30g0254 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 189 IPR013087 -
Lele30g0254 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 250 280 IPR013087 -
Lele30g0254 358 PANTHER ZINC FINGER PROTEIN 10 348 - -
Lele30g0254 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 281 305 IPR013087 -
Lele30g0254 358 ProSitePatterns Zinc finger C2H2 type domain signature. 122 145 IPR013087 -
Lele30g0254 358 SUPERFAMILY beta-beta-alpha zinc fingers 274 306 IPR036236 -
Lele30g0254 358 ProSitePatterns Zinc finger C2H2 type domain signature. 283 305 IPR013087 -
Lele30g0254 358 Pfam Zinc finger, C2H2 type 64 85 IPR013087 -
Lele30g0254 358 Pfam Zinc finger, C2H2 type 160 181 IPR013087 -
Lele30g0254 358 Pfam Zinc finger, C2H2 type 250 275 IPR013087 -
Lele30g0254 358 Pfam Zinc finger, C2H2 type 91 115 IPR013087 -
Lele30g0254 358 Gene3D Classic Zinc Finger 92 117 - -
Lele30g0254 358 ProSitePatterns Zinc finger C2H2 type domain signature. 194 217 IPR013087 -
Lele30g0254 358 ProSitePatterns Zinc finger C2H2 type domain signature. 162 184 IPR013087 -
Lele30g0254 358 Gene3D Classic Zinc Finger 278 305 - -
Lele30g0254 358 ProSitePatterns Zinc finger C2H2 type domain signature. 252 275 IPR013087 -
Lele30g0254 358 SUPERFAMILY beta-beta-alpha zinc fingers 157 184 IPR036236 -
Lele30g0254 358 SUPERFAMILY beta-beta-alpha zinc fingers 101 148 IPR036236 -
Lele30g0254 358 MobiDBLite consensus disorder prediction 311 330 - -
Lele30g0254 358 Gene3D Classic Zinc Finger 223 277 - -
Lele30g0254 358 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Lele30g0254 358 Gene3D Classic Zinc Finger 118 146 - -
Lele30g0254 358 ProSitePatterns Zinc finger C2H2 type domain signature. 93 115 IPR013087 -
Lele30g0254 358 Gene3D Classic Zinc Finger 147 219 - -
Lele30g0254 358 SUPERFAMILY beta-beta-alpha zinc fingers 62 115 IPR036236 -
Lele30g0254 358 SUPERFAMILY beta-beta-alpha zinc fingers 233 284 IPR036236 -
Lele30g0254 358 SMART c2h2final6 281 305 IPR013087 -
Lele30g0254 358 SMART c2h2final6 192 217 IPR013087 -
Lele30g0254 358 SMART c2h2final6 160 184 IPR013087 -
Lele30g0254 358 SMART c2h2final6 19 42 IPR013087 -
Lele30g0254 358 SMART c2h2final6 220 241 IPR013087 -
Lele30g0254 358 SMART c2h2final6 63 85 IPR013087 -
Lele30g0254 358 SMART c2h2final6 250 275 IPR013087 -
Lele30g0254 358 SMART c2h2final6 91 115 IPR013087 -
Lele30g0254 358 SMART c2h2final6 120 145 IPR013087 -
Lele30g0254 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 120 IPR013087 -
Lele30g0254 358 Gene3D Classic Zinc Finger 12 91 - -
Lele30g0254 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0254 Lele-ChrLele30 3211844 3214642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0254 87 308 C2H2 Transcription Factor Family AT1G72050 50.000 3.26e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele30g0254 zf-C2H2 0.0079 CL0361