Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0238 ATGGCGACCTCCCATTCCAGGGAATCTCGTAACGGCGAGAATTTTGGCGGTAAAAACAACCTGATCCCATGTCGTGTCGCATTACCATTGGCTCTTGATGCATGCATGTATGTCGGGCATGAGAAACAGAAGAAAGGGAAAAGTGAAGCAAAGATAGGGCTCAGAGCTGCTTCAAAAACCCTTATTTGGCCGATTCGATTGAAGATTACGTCGTTGTTTTCTTGGTTTCTGTACTGGATCTGCTTGGAGCTGAGAGTTAAGGGATCGGAGTGTAATTGTTGCTGTGGATTAACTAGGGTTTCCATGAGTCCACCTGCTGAGGAGAAGATGGAAGATGGTAAGCCATTTGCTACTTCAGCCAACAGCTCACAGGTCCATGGCGAACATGGTGACCCTGCTGACTCTCGTTTCACTGAATTATGCAAGAATGGGTTATCATTGGATGATGGAAGTTGCAGACAAGCAATGAAGCTGTTCACAGAAACCAAACACCTTCTACAGACCAATGTGTCATCTCTTGGGAATGGAACGTACGAAGAAGCAGAGAGGTATTGGTTTTCCTTTGTCTTATACAGTGTCAAGAGATTGGCTGATAAGCATATAGACAGTGAGAAGAAGGTGATCAATAGCAATGGACTTACCCTGTGCCAGATATTGAGAAAGGAAAAGCTAAACATTGTGGACTTTTTCAAAGAACTTCCTCAGTTTCTTGTTAAGAGTGGTCCAATTTTAAGTAATATATATGGCACAGATTGGGAAAACAGGCTTGAGGCAAAGGAGTTGCATGCAAACTTTCTTCACTTAAGCATTCTTAGCAAGTATTATAAACGTGCATTCGAGGAGTTCTTCTTGGCAAATGATGCTATTGAAAAAAGTTCAGCTGTTTCCGCGACTGGTGATTATGCATCTCAATATCATCGATTTGGATGGTTGGTTTTTTTGGCTCTTCGTGTCCATGCTTTCAGCCGATTTAAAGACTTGGTGACTTGCACCAATGGTTTAGTTTCTATATTGGCTATCTTGATTATTCACATTCCTGCCCGCTTCAGAAATTTTGACATTCATGACGCATCACGCTTTGTTAAGAAAAGTAGCAAAGGTGTGGACATCATTGCATCACTTTGCAACATCCATGACACTTCAGAAGATGATGTGAGAAAAACTATGGAGAAAGCCAATAATTTAATTGCTGATATACTGAAGAAGAAGCCTTGTCTGGCGTCTGAATGTGAAACTGAAACACTTGAGAATATTGACAAAGATGGCTTGCTCTACTTTAATGATCTTATGGAAGAATCATCTCTACCATCTTGTTTAAACATCTTAGAAAAAGATTATGATGATGCCATTCGTAACAAGGGTGAGCTGGATGAGAGGTTGTTTATCAATGAGGAGGACAGCTTATTAGCTTCAGGAAGCTTGTCTGGAGGTTCCATGTCCACAAGTGGTGTCAAGAGGAAATTTGATTCAATGGCGTCACCTGCAAAGACAATTACAAGTCCACTCTCTCCCCAACGCTCTCCTGCCTCTCATCATGCAAATGGCATTTCAATTAGCGCAAGTTCAAAGATGGCAGCCACTCCTGTAACCACTGCTATGACTACTGCTAAGTGGCTTCGTACTGTCATATGTCCACTTCCATCAAAGCCTTCGCCGGAGCTGGAGAAATTTCTGGCATCATGTGATAGGGACGTCACAAGTGATGTAGTGCGCAGGGCACAGATTATATTGCAGGCTATATTTCCTACTAGTCCTTTAGGAGAGCGATGTTTAACTGGAAGCCTGCAAAGTGCAAACCTGATGGACAATGTTTGGGCAGAACAACGGAGACTGGAAGCCATGAAGTTATATTATAGGGTCTTGGAGGCAATGTGCAGAGCAGAGGCGCAAATACTGCATGCAACCAATTTAACCTCATTATTAACTAATGAGAGGTTCCATAGATGCATGCTTGCATGTTCTGCAGAATTAGTGCTGGCAACACATAAGACTGTAACAATGTTGTTTCCTGCGGTTCTGGAAAGGACTGGAATTACAGCGTTTGACCTTAGCAAGGTGATAGAAAGCTTTATAAGACATGAAGATTCTCTCCCCAGAGAATTGAGGCGACATCTGAATTCATTGGAGGAACGGCTTTTGGAGAGTATGGTATGGGAAAAGGGTTCTTCAATGTATAATTCTTTGACAGTTGCCAGACCTTCCCTCTCTTCAGAAATAACTCGACTTGGCTTGTTAGCTGAACCAATGCCATCATTAGATGCAATTGCGACACAAATTAACTTCTCTTGTGGGGGCCTGCCCACTGGGCCTTCCTTACAGAAGCCTGAGACTTTACCAAGTCAAAATGGGGATATTAGGTCCCCAAAACGACTCTGCACAGAATATCGAAGTGTACTAGCAGAACGAAATTCCTTTACCTCACCAGTGAAGGATCGACTTCCCTTCAGTAACATTAAGTCAAAGCTACCCCCTCCTTTGCAGTCAGCTTTTGCAAGTCCAACAAGGCCAAATCCAGGAGGTGGAGGGGAGACTTGTGCAGAAACAGGGATCAATATCTTTTTTGGAAAGATTGTTAAGTTGGCGGCTGTCAGAATAAGTGGCATGGTTGAAAGGCTTCAGTTGTCTCAACAAACAAGAGAGAACGTGTACTGTCTTTTTCAACAAATACTAAATCAAAGGACATCAATTTTCTTCAACCGCCATATTGACCAAATCATTCTCTGTTGTTTCTATGGAATCGCAAAGATTTCTCAGCTGAACTTAACTTTTAGAGAGATCATTTACAACTATAGGAAGCAACCACAATGCAAACCACAAGTTTTTCGTGGTGTATTTATTGACTGGTCATCAACACATCGCAATGGGAGAACCGGTCAGGAGCATGTTGATATCATTACATTTTACAATGAAATATTTATCCCCTCTGTAAAAGCTCTGCTGGTTGAACTTGGTCCTGGGGGAACAACTACGAAAGCCGACCGAATACCTGAAGCCAACAATAACAGTGATGGTCATTTAGCTCAGTGTCCTGGATCTCCTAAAATTTCTCCTTTTCCTAGCCTCCCTGATATGTCTCCAAAGAAAGTATCTTCATCGCACAATGTTTATGTCTCGCCATTGCGTTCAGCCAAGATGGATGCTTTAATATCACATAGATCAAAAAGCTACTATGCCTGCGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACTGCCATCAATAACCGTTTGAATGGCACCCGAAAGGTTCGAGGACCCCTCAACTTTGATGATGTTGATGTTGGCTTGGTGAGTGACTCCATGGTTGCAAACAGTCTGTATCTTCAGAATGGAAGTTGCGCGTCGTCATCGGGAGCACCGGTGAAGTCTGAGCAGCCAGAGAGTTGA 3399 0.4287 MATSHSRESRNGENFGGKNNLIPCRVALPLALDACMYVGHEKQKKGKSEAKIGLRAASKTLIWPIRLKITSLFSWFLYWICLELRVKGSECNCCCGLTRVSMSPPAEEKMEDGKPFATSANSSQVHGEHGDPADSRFTELCKNGLSLDDGSCRQAMKLFTETKHLLQTNVSSLGNGTYEEAERYWFSFVLYSVKRLADKHIDSEKKVINSNGLTLCQILRKEKLNIVDFFKELPQFLVKSGPILSNIYGTDWENRLEAKELHANFLHLSILSKYYKRAFEEFFLANDAIEKSSAVSATGDYASQYHRFGWLVFLALRVHAFSRFKDLVTCTNGLVSILAILIIHIPARFRNFDIHDASRFVKKSSKGVDIIASLCNIHDTSEDDVRKTMEKANNLIADILKKKPCLASECETETLENIDKDGLLYFNDLMEESSLPSCLNILEKDYDDAIRNKGELDERLFINEEDSLLASGSLSGGSMSTSGVKRKFDSMASPAKTITSPLSPQRSPASHHANGISISASSKMAATPVTTAMTTAKWLRTVICPLPSKPSPELEKFLASCDRDVTSDVVRRAQIILQAIFPTSPLGERCLTGSLQSANLMDNVWAEQRRLEAMKLYYRVLEAMCRAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSSEITRLGLLAEPMPSLDAIATQINFSCGGLPTGPSLQKPETLPSQNGDIRSPKRLCTEYRSVLAERNSFTSPVKDRLPFSNIKSKLPPPLQSAFASPTRPNPGGGGETCAETGINIFFGKIVKLAAVRISGMVERLQLSQQTRENVYCLFQQILNQRTSIFFNRHIDQIILCCFYGIAKISQLNLTFREIIYNYRKQPQCKPQVFRGVFIDWSSTHRNGRTGQEHVDIITFYNEIFIPSVKALLVELGPGGTTTKADRIPEANNNSDGHLAQCPGSPKISPFPSLPDMSPKKVSSSHNVYVSPLRSAKMDALISHRSKSYYACVGESTHAYQSPSKDLTAINNRLNGTRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPVKSEQPES 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0238 1132 MobiDBLite consensus disorder prediction 495 514 - -
Lele30g0238 1132 Gene3D - 530 718 - -
Lele30g0238 1132 FunFam Retinoblastoma-related protein 1 530 718 - -
Lele30g0238 1132 SMART RB_A_2 527 728 IPR002720 GO:0005634|GO:0051726
Lele30g0238 1132 MobiDBLite consensus disorder prediction 105 131 - -
Lele30g0238 1132 Gene3D - 305 463 - -
Lele30g0238 1132 Pfam Retinoblastoma-associated protein A domain 527 728 IPR002720 GO:0005634|GO:0051726
Lele30g0238 1132 Gene3D - 810 1001 - -
Lele30g0238 1132 Pfam Retinoblastoma-associated protein B domain 850 977 IPR002719 GO:0005634|GO:0051726
Lele30g0238 1132 Pfam Domain of unknown function (DUF3452) 206 344 IPR024599 -
Lele30g0238 1132 SUPERFAMILY Cyclin-like 848 1020 IPR036915 -
Lele30g0238 1132 SMART DUF3452_2 196 344 IPR024599 -
Lele30g0238 1132 FunFam Retinoblastoma-related protein 1 802 1013 - -
Lele30g0238 1132 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 133 1131 IPR028309 GO:0006357|GO:0051726
Lele30g0238 1132 FunFam Retinoblastoma-related protein 1 305 463 - -
Lele30g0238 1132 SUPERFAMILY Cyclin-like 535 730 IPR036915 -
Lele30g0238 1132 Coils Coil 439 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0238 Lele-ChrLele30 2976146 2983221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0238 129 1132 Core Cell Cycle Gene Families AT3G12280 70.837 0.0 1421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Lele30g0238 RB_A 1.5e-64 CL0065