Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0231 ATGGGCCGGGTTCGGACATTCGGGGAAAATCCAAATGCTTTTGTGGTATTGTATCGTGATAATTTGGTTGCTTTGATTTCTGACCCTGCTGGCATTTTCTCCCAATCAATTTCTAGTGCCGCCGGTGAAGAAGCTGCGCGTGCTGCAGAGAGAGTCTTTAATCAAGCATTGAAGAAATTGCCCTCTCAGTCTCCTCCTCCGGATCAGATACCTGCTAGTACAACCCTTATCAAAGTCATTCGTAGGGCACAAGCATCACAAAAGTCACGTGGAGACACGCATTTAGCTGTTGACCAATTGGTTCTGGGTCTTATTCAAGATTCCCAGATTGGCGACTTGCTGAAAGAAGCTGGAGTTGTTACAGCAAGAGTGAAATCAGAGGTAGAGAAGCTTCGTGGCAAGGAAGGGAAAAAGGTTGAGAGTGCTTCTGGGGATACAACATTGCAAGCATTGAAGACTTATGGGCGGGACCTCGTTGAGCAAGCAGGTAAACTTGATCCCGTCATCGGACGCGATGAGGAAATCCGAAGGGTGGTGAGGATTTTATCAAGAAGGACGAAGAACAATCCGGTTCTCATAGGAGAGCCAGGAGTTGGTAAAACAGCCGTAGTGGAAGGTTTGGCACAGAGGATAGTTAGACGGGATGTGCCTAGTAATCTTGCTGATGTGAGGCTTATTGCATTGGACATGGGTGCTCTAGTGGCAGGGCGTCATCTTCCTGACAAAGCAATTGACTTAGTGGATGAGGCATGTGCTAATGTGAGAGTTCAACTTGATAGTCAGCCTGAGGAAATTGATAACCTTGAAAGGAAGAGAATGCAGTTAGAAGTGGAACTCCACGCCCTTGAGAAAGAAAAAGACAAGGCTAGCAAAGCACGTCTTGTAGAAGTATGTGGTGTGCGAAAAGAGCTTGATGATTTAAGAGATAAACTTCAACCTTTGATGATGAAGTATAGAAAAGAGAAGGAAAGGATTGATGAACTTCGTAGGCTCAAGCAGAAACGAGAGGAGCTAATGTTTGCCTTAGAGGAGGCTGAGAGGCGATATGATCTAGCTAGAGCTGCGGATCTGCGATATGGGGCAATTCAGGAGGTGGAATCAGCAATACAACAATTAGAAGGACATGCTGGTGAGAATTTGATGTTGACAGAAGTTGTTGGACCAGATCAAATAGCTGAGGTAGTGAGTCGTTGGACCGGTATACCAGTGACGAGGCTTGGCCAGAATGAGAAAGAAAGGTTAATAGGACTTGGTGAAAGATTGCACCAAAGAGTGGTGGGACAAGATCAAGCAGTAAGTGATGTTGCAGAGGCAGTGTTGAGGTCAAGGGCTGAGCATCTCCTGAGTGGACTCTCAGGAAATTGTTCGATGCAAGTAGCTAGGGATCGAGTAATGCAAGAGGTGAGAAGGCATTTTAGGCCAGAATTGTTGAACCGACTCGATGAAATTGTGGTATTTGATCCTCTTTCACATGATCAACTGAGGAAGGTTGCGAGGTTACAAATGAAGGATGTTGCAGTACGTCTTGCTGAGAGAGGAGTTGCTATGGCAGTGACAGACGCAGGATTGGATTTCATACTGGCAGAGAGCTATGACCCGGTTTATGGAGCTAGACCAATCAGGAGATGGATTGAGAGGAAGGTGGTGACAGAGTTGTCGAGGATGCTTGTGAGGGAAGAAATCGATGAGAACTCGACGGTTTATATAGATGCTGGGCCTGAGGGCAACTCGTTGGCATACCATGTGGAGAAGAATGGAGGATTGGTTAATGAGGCTACTGGGCAGAAATCAGATATCTTGATTCAGATCCCAAATGGATTTAAGAGTGATGCTGCTCAAGCAGTGAAGAAGATGAAGTTCGAGGAAATTGATGATGATGATGAAGATGCTGAGATGGAAGTTAATATGGGTATGGCTGCAGAAACCCAGTTTCATGTTTTGGCTGTTGATGACAGTATCATTGACAGAATGTTGATTGAGAGGCTCCTCAAAACCTCATCCTTCCAAGTTACTGCAGTGGATTCTGGAAGCAAGGCTTTGAAATTTCTTGGTTTAAATGAAGATGAACAGAGAAAAGCTCCTAATTGCCATCAGGATTTGGAAGTAAACCTGATCATAACAGATTACTGTATGCCAGGAATGACAGGCTATGATCTACTGAGAAAAATCAAGATGCTTAGAAGAAGGAGCTCAAGAATATTTTCTGAAACCTGTTCAACAGTCAGATGTAAACAAGCTCAAGCCACATTTGATGAAATCAAAGTGTTAAGGAAGAGGAAGACCAATTCATCAATAACAAAAGGGAGGACATGGAAGAAGAAACCCATTCACCAGAGAAAACCAGAGCAAAAATATAGCAGTTAG 2364 0.4446 MGRVRTFGENPNAFVVLYRDNLVALISDPAGIFSQSISSAAGEEAARAAERVFNQALKKLPSQSPPPDQIPASTTLIKVIRRAQASQKSRGDTHLAVDQLVLGLIQDSQIGDLLKEAGVVTARVKSEVEKLRGKEGKKVESASGDTTLQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRRDVPSNLADVRLIALDMGALVAGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVCGVRKELDDLRDKLQPLMMKYRKEKERIDELRRLKQKREELMFALEEAERRYDLARAADLRYGAIQEVESAIQQLEGHAGENLMLTEVVGPDQIAEVVSRWTGIPVTRLGQNEKERLIGLGERLHQRVVGQDQAVSDVAEAVLRSRAEHLLSGLSGNCSMQVARDRVMQEVRRHFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVAVRLAERGVAMAVTDAGLDFILAESYDPVYGARPIRRWIERKVVTELSRMLVREEIDENSTVYIDAGPEGNSLAYHVEKNGGLVNEATGQKSDILIQIPNGFKSDAAQAVKKMKFEEIDDDDEDAEMEVNMGMAAETQFHVLAVDDSIIDRMLIERLLKTSSFQVTAVDSGSKALKFLGLNEDEQRKAPNCHQDLEVNLIITDYCMPGMTGYDLLRKIKMLRRRSSRIFSETCSTVRCKQAQATFDEIKVLRKRKTNSSITKGRTWKKKPIHQRKPEQKYSS 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0231 787 Coils Coil 258 292 - -
Lele30g0231 787 Gene3D - 20 135 IPR036628 -
Lele30g0231 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 451 569 IPR027417 -
Lele30g0231 787 Pfam C-terminal, D2-small domain, of ClpB protein 489 569 IPR019489 -
Lele30g0231 787 SMART REC_2 644 759 IPR001789 GO:0000160
Lele30g0231 787 Pfam Response regulator receiver domain 646 734 IPR001789 GO:0000160
Lele30g0231 787 Gene3D - 624 756 - -
Lele30g0231 787 Pfam AAA ATPase domain 168 322 IPR041664 -
Lele30g0231 787 Gene3D - 489 589 - -
Lele30g0231 787 MobiDBLite consensus disorder prediction 764 779 - -
Lele30g0231 787 Gene3D - 263 376 - -
Lele30g0231 787 Pfam Clp amino terminal domain, pathogenicity island component 83 133 IPR004176 -
Lele30g0231 787 SUPERFAMILY Double Clp-N motif 22 144 IPR036628 -
Lele30g0231 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 236 IPR027417 -
Lele30g0231 787 FunFam ATP-dependent chaperone ClpB 226 399 - -
Lele30g0231 787 CDD AAA 169 236 - -
Lele30g0231 787 Pfam AAA lid domain 234 294 IPR041546 -
Lele30g0231 787 ProSiteProfiles Clp repeat (R) domain profile. 1 134 IPR004176 -
Lele30g0231 787 MobiDBLite consensus disorder prediction 764 787 - -
Lele30g0231 787 Gene3D - 452 488 IPR027417 -
Lele30g0231 787 SMART ClpB_D2_small_2 489 580 IPR019489 -
Lele30g0231 787 ProSiteProfiles Response regulatory domain profile. 645 787 IPR001789 GO:0000160
Lele30g0231 787 Gene3D - 151 262 IPR027417 -
Lele30g0231 787 PANTHER ATP-DEPENDENT CLP PROTEASE 60 237 - -
Lele30g0231 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 400 IPR027417 -
Lele30g0231 787 Coils Coil 318 355 - -
Lele30g0231 787 SUPERFAMILY CheY-like 643 727 IPR011006 -
Lele30g0231 787 Gene3D - 382 451 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0231 Lele-ChrLele30 2840091 2848632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0231 636 724 Response Regulator Gene Family AT3G57040 69.792 1.99e-37 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele30g0231 AAA_16 1.1e-08 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0231 30 2840091 2848632 Lele31g0273 31 2900333 2901423 hybridization
Lele30g0231 30 2840091 2848632 Lele32g1149 32 11653301 11660440 hybridization