Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0230 ATGCTTCATATTCTCGTAAAGCATAAACATTTCCGAACTGCACAAGAGATGCTTGAGAAAATTGCCCACAGGGATTTTCTTTCGTCGCCATCAGTTTTGAGAACTTTGATTGAAAATCAACATGACCCAGAGGTGAATTCGCATATATTGAGCTGGCTTGTAATACATTACGCAAAATCAAAGATGACCGATGATGCCATTCAGGTTTTTGAGCAGATGAGGTTATATAAATTGAATTCTCATTTGCATGCCTGTACTGTGCTTCTGAATTCTTTAGTCAAGGATGGGGTTACCAAAATGGTATGGAAGGTTTACAAACAAATGGTTAAAGCTGGTGTTTTTCCTAATATACATATCTATAATGTGTTAATCCATGCTTGTTCCAAATCAGGAGATGTAGAGAGGGCAGAACATTTACTGAATGAGATGGAAATGCAGGAGAGAATGGAAAGAGAAGGAATAAATCTTGACATTGTTAGTTACAATTCTCTTATTTATGGATTTTGTAGAGAGGGTAGGATGAGAGATGCGATGAGGATATTCAGCAACATCAAAGATGCAATTCCTAATAATGTTACATACACTACATTGATTAATGGGTATTGTAAAACAAATGACCTGGAGCAATCTCTGAAATTGTGTGAGATGATGCAGGCTAAGGGATTGTACCCTGGAGTTGTTGCTTATAATTCAATTTTGCGTAAGCTGTGTCAAGATGGAAAAATAAGAGAGGCAAATAAACTCTTGACCGAGATGAGTGAAAGAAAAATTCAGCCTGATAACGTCACATGTAACACATTGATTAATGCTTATTGCAAGATAGGGGATGTGAAATCTGCATTGAAATTTAAGAACAAGATGTTAGAGGCTGGATTGAAACCTGACCCATTTACATATAAAGCATTAATTCATGGGTTCTGCAAGATAAAAGAACTGGAAAGAGCTAAGGATATGTTGTTTTCCATGCTTGATGCTGGGTTTTCCCCCAATTATTACACTTATTCATGGATCGTTGATTGTTACTGCGATAAAGACAATGAAGATGCAGTTGTTACACTCCCTGATGAGTTTCTTAGAAGAGGTCTTTGTATTGATGTTTCAATATACAGGGCTTTAATAAGAAGGTTATGTAAGTTAGAAAGGATACAATGTGCTATGAAGTTATTTAATCTTATGGAAGGGAGGGGTATATCAGGTGACAGCGTTGTCTACACAAGTCTTGCTTATGCTCATTGGAAATTAGGGAATGCAATGTTTGCGTCAAATATATTGGAAGAGATGACCAGAAGGAGGTTGATGATAACAAGCAAAATCTATAAATGTTTTGGTAATACTCTTGGCAGTGAAAACCACACTTCATTCTGGAATTATGTAGTGGAAAGGGGCCTTATGTCAAGAAATACAATGAATAAAATAAAGCAGATGGAATTTTGA 1434 0.3626 MLHILVKHKHFRTAQEMLEKIAHRDFLSSPSVLRTLIENQHDPEVNSHILSWLVIHYAKSKMTDDAIQVFEQMRLYKLNSHLHACTVLLNSLVKDGVTKMVWKVYKQMVKAGVFPNIHIYNVLIHACSKSGDVERAEHLLNEMEMQERMEREGINLDIVSYNSLIYGFCREGRMRDAMRIFSNIKDAIPNNVTYTTLINGYCKTNDLEQSLKLCEMMQAKGLYPGVVAYNSILRKLCQDGKIREANKLLTEMSERKIQPDNVTCNTLINAYCKIGDVKSALKFKNKMLEAGLKPDPFTYKALIHGFCKIKELERAKDMLFSMLDAGFSPNYYTYSWIVDCYCDKDNEDAVVTLPDEFLRRGLCIDVSIYRALIRRLCKLERIQCAMKLFNLMEGRGISGDSVVYTSLAYAHWKLGNAMFASNILEEMTRRRLMITSKIYKCFGNTLGSENHTSFWNYVVERGLMSRNTMNKIKQMEF 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0230 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Lele30g0230 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 146 IPR002885 -
Lele30g0230 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Lele30g0230 477 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 147 382 - -
Lele30g0230 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 187 IPR002885 -
Lele30g0230 477 TIGRFAM PPR: pentatricopeptide repeat domain 262 295 IPR002885 -
Lele30g0230 477 TIGRFAM PPR: pentatricopeptide repeat domain 84 117 IPR002885 -
Lele30g0230 477 TIGRFAM PPR: pentatricopeptide repeat domain 119 144 IPR002885 -
Lele30g0230 477 TIGRFAM PPR: pentatricopeptide repeat domain 297 330 IPR002885 -
Lele30g0230 477 TIGRFAM PPR: pentatricopeptide repeat domain 192 225 IPR002885 -
Lele30g0230 477 TIGRFAM PPR: pentatricopeptide repeat domain 368 400 IPR002885 -
Lele30g0230 477 TIGRFAM PPR: pentatricopeptide repeat domain 227 260 IPR002885 -
Lele30g0230 477 TIGRFAM PPR: pentatricopeptide repeat domain 159 185 IPR002885 -
Lele30g0230 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Lele30g0230 477 SUPERFAMILY HCP-like 185 348 - -
Lele30g0230 477 Gene3D Tetratricopeptide repeat domain 358 432 IPR011990 GO:0005515
Lele30g0230 477 Pfam PPR repeat 220 253 IPR002885 -
Lele30g0230 477 Pfam PPR repeat 360 393 IPR002885 -
Lele30g0230 477 Pfam PPR repeat 153 182 IPR002885 -
Lele30g0230 477 Pfam PPR repeat 112 144 IPR002885 -
Lele30g0230 477 Pfam PPR repeat 189 217 IPR002885 -
Lele30g0230 477 Pfam PPR repeat family 259 308 IPR002885 -
Lele30g0230 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Lele30g0230 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Lele30g0230 477 Gene3D Tetratricopeptide repeat domain 241 357 IPR011990 GO:0005515
Lele30g0230 477 Gene3D Tetratricopeptide repeat domain 146 240 IPR011990 GO:0005515
Lele30g0230 477 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Lele30g0230 477 Gene3D Tetratricopeptide repeat domain 1 145 IPR011990 GO:0005515
Lele30g0230 477 Pfam PPR repeat 57 74 IPR002885 -
Lele30g0230 477 Pfam PPR repeat 402 431 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0230 Lele-ChrLele30 2837703 2839223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0230 11 461 Miscellaneous Gene Families AT4G11690 25.161 3.11e-46 166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0230 30 2837703 2839223 Lele31g0272 31 2897496 2899591 hybridization
Lele30g0230 30 2837703 2839223 Lele32g1150 32 11661303 11663060 hybridization