Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0226 ATGTTCCAGGCACGCTTCTGGGTTTTTCCTCGTTTTCGTTTCGTTTGGTGCTTGATGAGTCTTTCTCTGATTTCCGGGGGTTACGAATCTGTTGTTGAATTTAGAATTGAAAATTGGCTTGGGACTTCAGTGTTGATAGGTGTTGGACAACTTCTCTTTGAAGTGCTTGTGTGTGATTTAACTCCATTTATCACTGCCGTAGGCAAATGCATATTGGAAGTTATAAAATTGAATTCTAACTTTCTGTTGTATGATTGCATTTTGAATTGGTGCTGACTGGTGGTTGCTTGTACTAGCATGGCTTCTAGCAATCTATTATTTGATGATATACGGAGCAAATCTGAGGTTGATCCTGCTTCAAATGAGGAGCCAATGGATATCAGTGAGCTTGTGAATGATCCTGCACAAACTGCACTAAAATCTAATGTGGCTGTTACAAGCAGTGTTCATGAACTTTTAGAGTGTCCCGTGTGCTTGAATGCCATGTACCCTCCAATCCACCAGTGTTCAAATGGCCATACTTTGTGCTCAGGTTGCAAACCCAGGGTCCATAACCGGTGTCCTACCTGTAGACATGAGCTTGGCAATATTAGATGCTTGGCATTGGAGAAGGTAGCTGCGTCTTTGGAACTTCCTTGTAAATACCAGGCTTTTGGGTGCATGGGCATATATCCGTATTACTGCAAGTTGAAGCATGAATCTCAATGTGCATATAGACCATATAACTGTCCATATGCTGGTTCAGAATGCACTGTCATTGGTGATATTCCTTTTCTGGTGGCTCATTTGAAAGATGATCACAAAGTGGACATGCATAATGGGAGCACTTTTAATCATCGTTATGTCAAATCAAACCCCCAAGAAGTTGAAAATGCCACATGGATGCTTACGGTCTTCAGCTGCTTTGGTCAGTATTTTTGTCTACACTTTGAAGCTTTTCAGCTGGGTATGGCTCCAGTCTACATAGCCTTCTTGCGATTCATGGGTGATGATAACGAGGCAAAGAACTATAGCTACAGTCTTGAGGTTGGTGGTAACGGGAGGAAGATGACTTGGCAGGGCGTGCCTAGAAGCATCAGGGACAGCCACCGCAAGGTCCGTGACAGTTTTGACGGTCTTATCATCCAAAGGAACATGGCTCTCTTCTTTTCCGGGGGAGACAGGAAGGAATTGAAGCTAAGGGTTACAGGGAGAATTTGGAAAGAACAGTGA 1212 0.4332 MFQARFWVFPRFRFVWCLMSLSLISGGYESVVEFRIENWLGTSVLIGVGQLLFEVLVCDLTPFITAVGKCILEVIKLNSNFLLYDCILNWCXLVVACTSMASSNLLFDDIRSKSEVDPASNEEPMDISELVNDPAQTALKSNVAVTSSVHELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQAFGCMGIYPYYCKLKHESQCAYRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMTWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0226 403 SUPERFAMILY TRAF domain-like 208 400 - -
Lele30g0226 403 FunFam E3 ubiquitin-protein ligase SINAT3 207 263 - -
Lele30g0226 403 Pfam Seven in absentia protein family 197 396 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lele30g0226 403 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 264 396 IPR008974 GO:0005515
Lele30g0226 403 CDD RING-HC_SIAHs 153 191 - -
Lele30g0226 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 263 IPR013083 -
Lele30g0226 403 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 133 402 - -
Lele30g0226 403 ProSiteProfiles Zinc finger RING-type profile. 155 191 IPR001841 -
Lele30g0226 403 ProSiteProfiles Zinc finger SIAH-type profile. 208 268 IPR013010 GO:0008270
Lele30g0226 403 SUPERFAMILY RING/U-box 154 196 - -
Lele30g0226 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 207 IPR013083 -
Lele30g0226 403 FunFam E3 ubiquitin-protein ligase SINAT5-like 264 396 - -
Lele30g0226 403 CDD Sina 269 397 - -
Lele30g0226 403 FunFam E3 ubiquitin-protein ligase SINAT5-like 113 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0226 Lele-ChrLele30 2775559 2779705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0226 146 403 C3H Transcription Factor Family AT2G41980 79.070 1.87e-159 449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0226 30 2775559 2779705 Lele31g0261 31 2661088 2664521 hybridization