LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele30g0214	ATGGCTTTGGATTCTAAAGAAGATTCATATTGTCTTTCTGCTCTGCTTCAGGGCTGTAGCCAGGTCTACTGTGCAGCTCTTAAAGCTTCGCTTGAGCTCAACTTGTTTGAGATCATAGCTAAGGAAGGAGGAAGACACGTGTCAGCCTCTGAAGTAGCTTCAAAGCTTCCAACTTCATCTCAACACAAAGATTTAGCTTTCAGAATCGATCGTCTCTTGAGGCTTCTCGCGAGTCACTCTCTTCTGAATTGTTCATCTCGTGAGAGAGAAGATGGTGATGGCACTGAGAGAGTGTATGCAATTTCTCCTGTTGGAAAGCACTTTGTTGGTGGGGACGATGATGCTGGACTCTTGACTCTCTTCTCATCATTCATTTGTCATAAGGCACTTATGGATGCTTGGATGAATTTTAAGGTAGCAATTATAGAAGAAGACAATGATTTATTCAAGAAAGTTCATGGAATACCAATGTACCAATATGCAGAGAGAGATCCAACATGGAACAACATTTTCAACAAAGCAATGGCCAACCGTTGCAACATAGAGATGAATAGAATATTGGAAATATACAAAGGATTTGAGGGAATATCAACACTTGTTGATGTTGGTGGTGGCACTGGCCAAAACCTCAAAATGATTGTCTCTAAGTACCCTTCAATTAGGGCTATTAATTTTGATTTGCCGAGTGTTATTCAAAATGCACCACCTCATCCAGGGATCGAGCATGTTGGAGGGGATATGTTTGAAAGTGTTCCGAAAGGTGATGTCATTATGTTGAAGGCCGTATGCCACAATTGGTCAGATGAAAATAGCATAAAAGTGTTGAGGAAATGCTATGAAGCATTACCAGAGAAAGGGAAGGTGATAGTGGTGGAGTACATAATGCCTGAAGAAATTGGAGCAACAGAAGAAGCCAAGTTTGTAGCAGGCTTGGACAACCTCATGTTCCTTCATGATGGAAGAGAAAGAACTGAGAAAGAATTTGAATCTCTTTGCAAACGTTCTGGCTTTTCTGGCTTCAAAGTCGCTTCTCGTGCTTTCTCTGCTTTAGGAGTTATGGAATTATACAAAGAAGGTGAGGAGATTAAGGCAGAATATGGGAGCTGGCTAGGGATTCAGGCAGCTAGATGGATTGATGATGCTATAAGAGAGTGTAAAGAGAGTTGGGAGGAGATTGATAGGGGGAGGAGGACTAATAGAGCTGAAAAGGAAGTTATCAGAATTGAAGATGAGACAAAAAAAGTAGCTGGTGAAGAGGAAAGCAGTGGTTTGGCAATATCTATTGATGAGGCTGAAGGAGGTAATGTTGTGGAAAGTAGGGATGGGAAGTGTGGTTCTGGGAAGACTTTTAAGAAGGTTTTGAGGAACAAAGAGAACTTGAATAAAGCAATAGTTCTCTATGGGAGTATCTCTCCCATGTCAGGAGTTACCATAGGCCAAGATGTGCAATCTGCAAATGAAAGCAGGAGTGTGAGATTGGCAAAGAAGCTGGGTAGGAGAAAAGGAAGGGCAAGAGGGGAAGTTACTGTTAATGCTGCGAAAGGAGAAGATAGTAATAAGGGGGGTGATTTACTCTTATTTGCAGAAAGAAAGAAAAAGTTAGTGGTGAATAGATTGAGAAGGAGCTGTGGGACGGATTGTGGGTTAGAGGTTGATCCTATTGGAAGGAGTGGAGGTTTATGTGTGTGGTGGAGCAAGGATATAAAGTTGGAGGTGTTGTATACCTCAAAGAATGTAATTCACTTGAAGACTGATTCTGGAGTTATTGATGTTCCAGATTTTGCTACTTTTGTTTATGGTGATGTGAAAGAAAGGGAGAGAAGCAGAATCTGGTGCATTATCAGGGAGTTTGCTAAAGAAATAGAGGCTCTTGGCTGTGTGCAGGGTACTTTAATGACCTTGCATCTCAAGAGGAGGACAAAGGGGGAAGCCCGAGAGCTAGGGTGGAAGGATGTGGCAGGGCTGGAGAACGATTGTGTGAAAGATGTAGTAAGAAGGTTAAGGAACTGTGAGAAGGAATTAATAGTGAGGAAAAAGAAGGCTTTCCCAAATAATAAGAAGCTGATAGACAAACTGATTAAGCAGCTGGCAGATTGCTATGAAGTAGAATTCTCAGGGGCTGTGATGAGAAAGGGTAATATATCTTCTTATACTACTGTACCAGAGGATGTGAAGAGCTGGTGTGTGGTTGATATCCTGCAGAATGGAAGCTGGGTGGTGGAATTATTAAGGGGTGTGGTTCCAGATAATTTTTTGGAAAAAGTTGAACAGGTACCTTTGGATTTTTTGCAGAAAAAGGATCAACCTATGTGGACTAACACAAAAAATGGAAGTTATGTAGTTAAGAAGGGTTATCATGATGGGAAGAAAATGAAAAAAGGGGAGAATAATATAGCAGGATCATCTTTGGTTGTCGCTAATGAGCTATGGAAGAAGGTATGGAGAATTAAGGCTTTGCCTAAGATTTTGCATTTTATATGGAGATGTGTGGTAGTTGCAGTGACTGTGCGAGAAGCTTTGACAAGAAGGAAGTGTAGAGTTACAGAATCATGTCCTACAAGGAGAGACAAAATTGAAACACTAGAGCATGCCCTTTTCTTGATCTAA	2607	0.4124	MALDSKEDSYCLSALLQGCSQVYCAALKASLELNLFEIIAKEGGRHVSASEVASKLPTSSQHKDLAFRIDRLLRLLASHSLLNCSSREREDGDGTERVYAISPVGKHFVGGDDDAGLLTLFSSFICHKALMDAWMNFKVAIIEEDNDLFKKVHGIPMYQYAERDPTWNNIFNKAMANRCNIEMNRILEIYKGFEGISTLVDVGGGTGQNLKMIVSKYPSIRAINFDLPSVIQNAPPHPGIEHVGGDMFESVPKGDVIMLKAVCHNWSDENSIKVLRKCYEALPEKGKVIVVEYIMPEEIGATEEAKFVAGLDNLMFLHDGRERTEKEFESLCKRSGFSGFKVASRAFSALGVMELYKEGEEIKAEYGSWLGIQAARWIDDAIRECKESWEEIDRGRRTNRAEKEVIRIEDETKKVAGEEESSGLAISIDEAEGGNVVESRDGKCGSGKTFKKVLRNKENLNKAIVLYGSISPMSGVTIGQDVQSANESRSVRLAKKLGRRKGRARGEVTVNAAKGEDSNKGGDLLLFAERKKKLVVNRLRRSCGTDCGLEVDPIGRSGGLCVWWSKDIKLEVLYTSKNVIHLKTDSGVIDVPDFATFVYGDVKERERSRIWCIIREFAKEIEALGCVQGTLMTLHLKRRTKGEARELGWKDVAGLENDCVKDVVRRLRNCEKELIVRKKKAFPNNKKLIDKLIKQLADCYEVEFSGAVMRKGNISSYTTVPEDVKSWCVVDILQNGSWVVELLRGVVPDNFLEKVEQVPLDFLQKKDQPMWTNTKNGSYVVKKGYHDGKKMKKGENNIAGSSLVVANELWKKVWRIKALPKILHFIWRCVVVAVTVREALTRRKCRVTESCPTRRDKIETLEHALFLI	868

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele30g0214	868	Pfam	Dimerisation domain	26	77	IPR012967	GO:0046983
	Lele30g0214	868	PANTHER	O-METHYLTRANSFERASE	24	340	IPR016461	GO:0008168
	Lele30g0214	868	SUPERFAMILY	"Winged helix" DNA-binding domain	8	113	IPR036390	-
	Lele30g0214	868	CDD	AdoMet_MTases	198	295	-	-
	Lele30g0214	868	Pfam	O-methyltransferase domain	134	338	IPR001077	GO:0008171
	Lele30g0214	868	ProSiteProfiles	SAM-dependent O-methyltransferase class II-type profile.	15	357	IPR016461	GO:0008168
	Lele30g0214	868	Pfam	zinc-binding in reverse transcriptase	807	866	IPR026960	-
	Lele30g0214	868	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	124	344	IPR029063	-
	Lele30g0214	868	Gene3D	-	22	186	IPR036388	-
	Lele30g0214	868	FunFam	Caffeic acid O-methyltransferase	112	357	-	-
	Lele30g0214	868	Gene3D	Vaccinia Virus protein VP39	168	345	IPR029063	-
	Lele30g0214	868	FunFam	Caffeic acid 3-O-methyltransferase	1	108	-	-
	Lele30g0214	868	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	19	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele30g0214	Lele-ChrLele30	2558959	2572004	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele30g0214	7	358	Monolignol Biosynthesis Gene Families	AT5G54160	48.596	4.87e-107	332