Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0210 ATGGCAAAGAGGAAGAAGAGCTGGTTTAGTTTTGTGAAGAGGCTCTTTGTGTGGGACACAGAGTCCAAACCAGAGAAGAAAGAGAAAAGAAGGAAATGGATGTTTGGAATTGGAAGGATAAAGATAAAGAGATTACCTTCTATTACAGCTCCACCGGCAACACAAAAAGAAACAAAACAAGAGGTTGAAAAACTCAACAATGGCAATCAATGTCACGAAGAAACTGAAGAATTACAAGTCGTTGTTAAGTCCATAATTGAGGCTCCTCAACCCACATTACAATGCCAGAGGAAGATTCAAGAATCTTCAGCCATCAAAATTCAAACTACATTTCGGGGTTACCTTGCTAGGAAGGCTATAAGGGCATTGAAGGGAATAGTGAAGCTACAAGCTATCATTAGAGGCAGAGCAGTAAGAAGGCAAACTATGAGCACTCTGAAGTGCTTGCAGTCACTTGTTGATATTCAGTCACAGGTCTGTGCCAAGAGACTCCAAATGGTTAAAGGTAGATGGGATTATGATGAGAACCAAGATAGTCCAAGTTCAAGAGACAAGATAATAAGGATGGATTCAAACAGTGAAAGGATGTGGGATGACAGTATTTTGTTGAATGAAGAGACAGATGCTTCTTACATGAGCAAGAAAGAAGCAGAAGTCAAGAGAGAACGAATGAAAGAATACTCATTCAACCATCGAAGATCAGCAGAATCAGATAGAAAGAAGGTAAATGGAAGATGGAGGTATTGGATGGAGCAGTGGGTGGATACCCAACTTTCCAAAAGCAAAGAACTTGAAGATTTAGATTCAGTTTTCAGTTCACATTACAGAGCAGCAGCGGAAGAAGATGGAGGAGGAGGAGGAAGACAGCTCAATGTGAGAAATATTCAAAGTCAAAGACAAAATCAGATTATTGAAGGCCTATATTCTCCAAAACTTGCTCCAATAAGAAAACCCTCTCCTCACAGAAGGCAACATTCTCTGGGAAATGATGAGCCTTCAAGCCCTTCTGTAATACTTCCAACATACATGGCAGCAACAGAATCAGCGAGAGCCAAAACAAGATCTTCAAGATCCCCAAAACTAAGAACTGTGAATGTTGTGGATACAACAAAACTTGATGGGAACTCACCATGCAAAAAGAAGATATCTTTTGTATCTTCTTCCATTAACCAGCAGAAATCTCCAAGTTTAAAGGGAGTCTCAGGACCTATAAGATCAAGCAGGACAATGAAGGATCTCAGCATTAACTCAGATAGCTCATTTCTGTACGGTTACAACAGAGATTGGGATGTACAAGGTATCTTCAAATGA 1311 0.4005 MAKRKKSWFSFVKRLFVWDTESKPEKKEKRRKWMFGIGRIKIKRLPSITAPPATQKETKQEVEKLNNGNQCHEETEELQVVVKSIIEAPQPTLQCQRKIQESSAIKIQTTFRGYLARKAIRALKGIVKLQAIIRGRAVRRQTMSTLKCLQSLVDIQSQVCAKRLQMVKGRWDYDENQDSPSSRDKIIRMDSNSERMWDDSILLNEETDASYMSKKEAEVKRERMKEYSFNHRRSAESDRKKVNGRWRYWMEQWVDTQLSKSKELEDLDSVFSSHYRAAAEEDGGGGGRQLNVRNIQSQRQNQIIEGLYSPKLAPIRKPSPHRRQHSLGNDEPSSPSVILPTYMAATESARAKTRSSRSPKLRTVNVVDTTKLDGNSPCKKKISFVSSSINQQKSPSLKGVSGPIRSSRTMKDLSINSDSSFLYGYNRDWDVQGIFK 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0210 436 ProSiteProfiles IQ motif profile. 124 151 IPR000048 GO:0005515
Lele30g0210 436 MobiDBLite consensus disorder prediction 312 337 - -
Lele30g0210 436 PANTHER IQ-DOMAIN 5-RELATED 1 387 - -
Lele30g0210 436 ProSiteProfiles IQ motif profile. 100 128 IPR000048 GO:0005515
Lele30g0210 436 Gene3D - 98 151 - -
Lele30g0210 436 Pfam IQ calmodulin-binding motif 102 120 IPR000048 GO:0005515
Lele30g0210 436 Pfam Protein of unknown function (DUF4005) 319 393 IPR025064 -
Lele30g0210 436 SMART iq_5 99 121 IPR000048 GO:0005515
Lele30g0210 436 Coils Coil 55 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0210 Lele-ChrLele30 2486020 2489107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0210 1 421 IQD Protein Family AT5G13460 43.305 2.19e-99 302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0210 30 2486020 2489107 Lele31g0236 31 2411198 2414471 hybridization
Lele30g0210 30 2486020 2489107 Lele32g1178 32 12132997 12137074 hybridization