Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0193 ATGGGAAGCTTCGTAGTCGAAAAGAGAGTAGAAGCGATCAGTTCCCTTTTCGCAATGGTTGAAACTCGTCGTAAGCGCCCCAAAATTGCCAGAGGAGAAGATGATTATATGCCTGGAAGCATTATCGAGATTGAGCTTCTTAAGTTTATGACCTTTGACTACTTAAAATGTAAACCTGGTCCTCGTCTGAATCTTGTTACTGGACCCAATGGTTCTGGGAAGAGTTCTCTTGTGTGTGCCATTGCACTTGGCCTTGGGGGTGAGCCTCAGCTTCTCGGGCGAGCAACAAGTATTGGATCATATGTGAAGCGGGGAGAAGAATCAGGTTGCATAAAGATTACACTGAGAGGGGATAGTAAAGATGAGCATATCACTGTTATTCGGAAAATGAATACTAGCAACAAGTCTGAATGGTCGTTCAATGGAAGAGTAGTGCCTAAAAAGGATGTGATAGAAGTCATTCAACGGTTTAACATCCAAGTTAATAATCTGACTCAATTTTTACCCCAGGACAGGGTCTGTGAATTTGCTAAATTAACTCCTGTGCAACTTCTGGAAGAGACCGAAAAGGCTACTGGTGATCCCCAACTCCCAATCCTTCACTGTGGTCTTGTTGATAAAAGCCGTGCATTGAAGCAAATTGAGCTGACAGTGAAGAAAAATGAAGAAACTTTGAAACAGCTAAAGGACCTTAATGCTGAACTTGAGAAGGATGTTGAACGTGTCCGTCAAAGGGATGAATTACTTAAAAAGGTTGAGTCCATGAAAAAGAAAGTGCCGTGGCTTAGATATGATATGAAGAAGGCTGAATACTTAGAAGTTAAAGATCGTGAAAATGATGCTAAAAAGAAGATGGAGGAAGCTGCAAACATATTAAATGATCTTAAAGAACCTATCGAGAAACAGAAAAAGCACAACGCAGCAATGGATATGGAATATAAAAAAGTTGCCAACCTTATAAATGGCAATGCCAAAAAGCGAATGGAACTGCTGGAGAAAGAAAACCATCTGGGTGTGGAATTACAAGGAAAATGCAATGAAATGGAAGATTTGAGGAGGCAGGAAGAAACTCATCGGCAAAGATTTTTAAAGGCTAAGGAGGAACTTGCTGCTGCTGAGCATGAACTAGAGAATCTGCCTCATTATGAACCTCCAAAGGAAGAAATTGAAAGACTAAAAGATGAAATTCTGAACTTGCAAAATTCTGCATCTCAAAAGAGGCTAGAGAAGTCAGAAACAGACAAATTTTTGTATCAGAAAAAGTCAGCACTGTCAGAGTGTCTAGACAGGCTGAGGGAGATGGATAGTAAAAATACTAAGTGTTTGCATGCGTTACGAGAATCAGGGGCAGAGAGGGTAATGGAAGCTTACAAATGGGTGCAAGATAATCGCCATTTATTCAATAAAGAAGTTTATGGTCCTGTATTGCTGGAGGTTAGTGTCTCAAAGCAGACTCATGCTGCCTTCCTGGAGGGTCATGTTCCTTATTACATCTGGAAGTCTTTCATTACTCAAGATTCTGGTGATAGGGATCTTTTGGTAAAAAATCTGAACTCCTTTGATGTTCCAGTATTAAATTATACTGGTGGGGATGGCAGTCAGAGACAGCCTTTTCAAATTTCTGAAGATATGCGTACTCTTGGTATTTACTCCCGTCTTGATGAAGTTTTTGATGCTCCTACAGCTGTTAAGGAGGTTTTGATTGGACAGTTTGGTCTGGATCATTCTCATATTGGTACCAGAGAAACTGATCAGAAAGCAGATAGGGTCCAACAATTGGGCATTTTTGACTTTTGGACTCCAGATAATCACTATCGTTGGTCTAAATCTAGATATGGGAATCATGTGTCGGGAGTTGTTGAACAAGTACAGCGCTCAAGACTTCTTTCATACAATATAGATGCAAGAGAAATCGAGAAGCTGAGGTCTCACAAAATGGACCTTGAAGAATCTATAGCAAACTTGGAAACAGCTTCTAGAAGGTTACAAGATGAGGAGAGACGCCTAAGCAATGAAGCAGCTAATCTTCGTAGACAGCGGGATGAAATAAACACTACTGTGCTTAAAGAGAAGGAAAAGCGCCGGGACATCATGCGCACTATCGAACTTAGGAAAAGGAAATTAGAATCAATGGCGGGGGAGGGTGATGTGGATATGGTCATTACTAAGCTGACTGATGAAGCTAGAAATTGTAAGATTCAGCGATTCCACAATGCAATGAAAATTAAGAACCTACTTCTTGAGGCAATTGGTTATAGACGGAGTTTTGCTGGAAAGCATATGGCTATTCTTGACTTTGAGGCCAAGATTAGGGAGTTGGAGGCCAATTTGAAGCAGCATGAGAAGTTTGGTTTGCAAGCATCATTACACTTTGAAACGTGCAAGAAGGAGACTGAGAATTGTCGCCAGCAGCTTTCAGAATGTTTGAGGCATGCTGAATCAATTGCTCCCATCACTCCACATCTTGAGAAGGAATTTCTTGAGATGCCCTCTACTATTGAGGATTTGGAAGCTGCTATCCAAGACACCACTTCTCAGGCCAATTCTATACTTTTTGTCAATCATAATGTGTTGGAACAATATGAAAACCGTGAGCGTCAGATAGGAGCTTTAGCCACAAAACTTGAAGAAGATAAGAAGGAAGTTAGTAGGTGTCTATCTGAAATAGATACCCTAAAGGGGACATGGCTTCCGACATTGAGGAACCTTGTGGCACAGATAAATGAAACCTTTAGTCGTAATTTCCAAGAGATGGCTGTTGCAGGAGAAGTTTCACTAGATGAGCGTGATGTGGACTTCGATCAGTTTGGAATACTCATAAAAGTGAAGTTCAGACCAACAGGACAGCTTCAAGTTCTGAGTGCCCACCATCAGTCTGGAGGGGAGCGATCAGTTTCTACTATTCTTTATCTTGTTTCTCTTCAAGATCTTACCAACTGCCCATTCAGAGTTGTTGATGAGATTAATCAAGGCATGGACCCGATAAATGAAAGAAAAATGTTCCAGCAACTAGTGAGAGCTGCCAGCCAGCCAAATACACCACAATGTTTCTTGCTTACCCCAAAGTTGTTACCAGATCTGGAATACAGTGAAGTGTGCAGTATATTAAATGTAATGAATGGGCCTTGGATTGAGAAAGTCTCAGAAGTTTGGGGGGAAGGTGACCGATGGGGGAAAATTGCAGATTTGATTGTGGAGAATCAAAGGTGA 3210 0.4115 MGSFVVEKRVEAISSLFAMVETRRKRPKIARGEDDYMPGSIIEIELLKFMTFDYLKCKPGPRLNLVTGPNGSGKSSLVCAIALGLGGEPQLLGRATSIGSYVKRGEESGCIKITLRGDSKDEHITVIRKMNTSNKSEWSFNGRVVPKKDVIEVIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKATGDPQLPILHCGLVDKSRALKQIELTVKKNEETLKQLKDLNAELEKDVERVRQRDELLKKVESMKKKVPWLRYDMKKAEYLEVKDRENDAKKKMEEAANILNDLKEPIEKQKKHNAAMDMEYKKVANLINGNAKKRMELLEKENHLGVELQGKCNEMEDLRRQEETHRQRFLKAKEELAAAEHELENLPHYEPPKEEIERLKDEILNLQNSASQKRLEKSETDKFLYQKKSALSECLDRLREMDSKNTKCLHALRESGAERVMEAYKWVQDNRHLFNKEVYGPVLLEVSVSKQTHAAFLEGHVPYYIWKSFITQDSGDRDLLVKNLNSFDVPVLNYTGGDGSQRQPFQISEDMRTLGIYSRLDEVFDAPTAVKEVLIGQFGLDHSHIGTRETDQKADRVQQLGIFDFWTPDNHYRWSKSRYGNHVSGVVEQVQRSRLLSYNIDAREIEKLRSHKMDLEESIANLETASRRLQDEERRLSNEAANLRRQRDEINTTVLKEKEKRRDIMRTIELRKRKLESMAGEGDVDMVITKLTDEARNCKIQRFHNAMKIKNLLLEAIGYRRSFAGKHMAILDFEAKIRELEANLKQHEKFGLQASLHFETCKKETENCRQQLSECLRHAESIAPITPHLEKEFLEMPSTIEDLEAAIQDTTSQANSILFVNHNVLEQYENRERQIGALATKLEEDKKEVSRCLSEIDTLKGTWLPTLRNLVAQINETFSRNFQEMAVAGEVSLDERDVDFDQFGILIKVKFRPTGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEVCSILNVMNGPWIEKVSEVWGEGDRWGKIADLIVENQR 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0193 1069 CDD ABC_SMC5_euk 942 1044 - -
Lele30g0193 1069 Coils Coil 638 693 - -
Lele30g0193 1069 FunFam Structural maintenance of chromosomes 5 865 1036 - -
Lele30g0193 1069 Pfam RecF/RecN/SMC N terminal domain 41 1009 IPR003395 -
Lele30g0193 1069 Gene3D - 867 1028 IPR027417 -
Lele30g0193 1069 Coils Coil 389 409 - -
Lele30g0193 1069 Coils Coil 763 783 - -
Lele30g0193 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 1012 IPR027417 -
Lele30g0193 1069 Coils Coil 858 881 - -
Lele30g0193 1069 Coils Coil 211 252 - -
Lele30g0193 1069 Coils Coil 268 295 - -
Lele30g0193 1069 Coils Coil 341 375 - -
Lele30g0193 1069 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 22 1059 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Lele30g0193 1069 CDD ABC_SMC5_euk 39 185 - -
Lele30g0193 1069 Gene3D - 40 236 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0193 Lele-ChrLele30 2031931 2051987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0193 19 1060 Structural Maintenance of Chromosomes family AT5G15920 63.436 0.0 1352