Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0186 ATGAAGAGGTTGAGGTCTAGCGAGGATCTCCATTCGTACGGAGACAAAAATGGCTGCAAGGATTCGAATCTGAATCGATCCTCGTCTTCTTCACACAGAACCTTTTACTACAAACCTGATAATGTGCGGAAGGGATTGCTTTCCTCATCGTCTTCGGCGTCTCGGTATGACAGGGATCGAACGATGGATGAGGATCGGGAAGGCTCCCGCTTGGTTCGGAAGCGATCAGACCATGATTTTGATAGTTTTGATCGCAGAAAGGGGTTTGATCGTTACAGGGACACTGGAGATAGTCGAGGGTACGGAGCTGGAGGGAATAGGGGTTTGATTCAGAGGTCGGAGAGTTTTTGTGGGTCTAGGAGGGATTTTCCGAAGGGCTTTCGGTCTGAGAGGGACCGGTCTCGGCGGGAAGGCAGTGTGTCGTCGTGGCGGAGATTTGGCGGTGGGTTAAAGGATTTTGATGATAGTGGCAGGGGTAGCAGAGTTGGACTGGAAGATAGAGTAGTGCGGTCTCCGAGGAATTTGAGGGATGTAAAATCCCCGACATGGTCAAAAGATTCAGAGAGCGAGCATTCTAAGATGAGTGAGCAGTCTAAGATGAGGTCTTCTTCAAGAGGATCTAGAGATGCAAAGTCGAAGTCCAAGTCTCCATCATGGTCCAAGGATTCAGAGAGTGAACAATCAAGGAGTGAGCAATCGAAGAGTGTTGAGGTGAAGAAAACTGAGGAAGTGCAGGTCGAGAGCCGTAGTAGTAGTGAAATGGAAGAAGGAGAGCTGGAGCCAGAACCCATGCCTGAAACAGAACCAGAAAAGGATCCTAATGCTGCACCTAAGAATGAAGGCCACACCTCTATTCCTTTGGAGGCTGATGAGAAGGAAATCCAGACTGAAAGGCAGCTCAATGTTACAGATACTACTACGCATGAAATACCGGAAGCGTTAAATAAAGAAGAGGCAAAACCCGAAGAGGAAACCGAGTCAGCAGAACAGAATGTGGAGAAAGATGAAAAGCTGCCAGATATTAAGAATGATCCAACTGATCAAGTGCATGATACCGAAAATGAAATCGAAACTTCTGTTCATAATGATAACAAGGCAGGAGAGAGTTTGAAAGTCGAAATCACATGTGAGGGGGAAACAAAGGAAGGTGCGGAGCAAGAGAAATCATTGCTTCATGAAGAGGAACATAAGCAGGAAAATGGTGCAGATCTTGAAACCAGGGCAGACTCTGACAAACCAGAGCCAAACAAGGACGTTTCAACAGAAAATGAAGTGCTTAAAACTGATGGGGAAATGACGACGGAGACTGTAACCAACAATGTGAAGGATAAAGGCAAAAGTGTCTCTGTGACTCCTACTGATGTTGTTCACCCTTCTGAAGATGGTCTGTGGAATGACAGAGGACCCAGAGATCTCACAACATACTCTGGCGATGCCATGGAAGGTCCAAGTACAAGGGGCTTTGAGTTGTTTTCTAGATATCCTGTTAGGAAAGCAGAGAAAACTGACCAATCAAGTCTCAGCAAACATAAAGATGAAAGTCTTTCAATGGAGGATCTTGATCTTTCTCTTAGCTTGCCTAATGTTTTGTTACCTATTGGTGCTAATGAGAATACACCAGCCCCTGAATCCCCCAGTCAAGCTCGAAGTGTACAGTCTTTGAGTACATTTCGTACCAACTCAGAAGGATTTACTGCGTCAATGTCTTTCTCAGGTTCTCAATCTTTTTATCACAATCCAAGCTGTTCTCTCACACAAAATTCGATCGACTTTGAACAATCTGTCCATAGTCGCCCATTATTTCAGGGAATAGATCAAGTTTCTCATGGAGGCTGGCAAGGTCAGTCTCAGACTGATCCCAAACAGAAAGAAATTCCTTACTGTCAAGGAACTTTGATTAATGGCAGTGGGACTTCTTGTCAGTCCCAAGCAACATGGGGTATTTTGGATGGCCAAGCTGTGAAAGGCCAGCCTTCTAGGGTTGTAGAAGGTCAGCCTTCTAGGGTTCTAGAAAGTAGCTCAAAAATGGCCAGTGGACTTGACAGGCAGTTAAGTTTTCATAAGCAGCTGTCAGGACAGTCAAGGCGCCATGATGATGTTAGATCTCCTTCACAGAGTGTTGGTTCCCATGACATTGGGTCAAGTTATAGTTTTGACAAGAAGAGAGAAATGAGAGACAGGAGTAATGGTAGTTTATATAGAACTGCAAGCCACAAGGAACAAGAACAATTTCAGATGGGTGGAATTGAGTTTGTTGAGACTATCATTGCAAAAATAGTTTCTGAACCAGTGCCTGCAATGGCTAAAAAGTTTCATGAAATGGCTGGACAGACTTCATCATGCTTGAAAGAGAGCATTCGTGAGATTATGCTTAATGCAGATAAGCGTGGGCAAATACTTGCTTTTCAGAAAGTTCTGCAGAACAGGTCTGATATAACCTTGGAGGTTTTACTAAAGGCCCACCGAGTTCAATTGGAAATTTTGGTTGCTTTGAAAACAGGTTTAACTAATTTTATTCAGTTAGACAACAGCATTTCGTCTACTGATTTAGCTGAGATTTTTCTGAACTTAAGATGTAGGAATCTTTTATGCCGGAGTCAATTGCCTGTGGATGAATGCGATTGTAAAGTATGTGCACAGAGAAGTGGCTTTTGCAGGGAATGTATGTGCCTTGTGTGTTCAAAGTTTGACAATGCATCAAATACATGTAGTTGGGTCGGGTGTGATGTTTGCCTTCATTGGTGCCATACGGACTGTGGGTTACGTGAATCATATATTAGAAATGGACACAGTGCTACTGGGGTACAAGGGGTAACTGAGATGCAATTTCATTGTATTGCCTGTGATCATGCTTCAGAGATGTTTGGTTTTGTCAAGGAAGTGTTTCTAAATTTTGCAAAAGATTGGTCAGTTGAAGCTCTTCGCAAGGAGCTTGAATATGTGAAGAGAATATTTTCTGCCAGCAAAGACATGAGAGGGAGACAGCTGCATGAGGTTGCTGATCAAATGCTGCTAAGGTTGGCAAATAAGTCTAAACTTCAAGAGGTTTATAGCCACATCATGTCTTTCCTAAATGATGGAGATTCTCCCAAATTAGCCTTGACACAGAACTTTCCTGGGAAGGAACAAATTAAAGAAAAGAATGCGGTTGCTGAGCCCAGCCATGAAGCTGCCTGGATGAAATCTATCTATTCTGAAAAGACGCCTGTGTTGGAACGGCCAGCAAACATCCTTTCAAGCTTTGACCAGAACGATAAACGGACTCCGCCGCAAGAGTTGCAGACGAATGTCCATAAGGACTATGGTTTTGATGAATTTGAGAGTATAGTAAAAATTAAACTGGCAGAGGCTAAAATGTTTCAAACACGTGCGGATGATGCCAGAAGAGAAGCCGAAGGCCTGAAACGCATTGCCTTGGCAAAGAATGAAAAGATTGAAGAAGAGTACGTCAGCCGGCTCTCGAAGTTGCGACTGGCGGAGACTGAGGAAATGCGTAAACAAAAATTTGAAGAACACCAGGCACTGGAAAGAGCGCATCTGGAGTACTTTAACATGAAAATGAGAATGGAAGCAGACATTAAGGATCTGCTATTGAAAATGGAAGCGACGAAAAGGAGTCTTGCCATGTGA 3630 0.4383 MKRLRSSEDLHSYGDKNGCKDSNLNRSSSSSHRTFYYKPDNVRKGLLSSSSSASRYDRDRTMDEDREGSRLVRKRSDHDFDSFDRRKGFDRYRDTGDSRGYGAGGNRGLIQRSESFCGSRRDFPKGFRSERDRSRREGSVSSWRRFGGGLKDFDDSGRGSRVGLEDRVVRSPRNLRDVKSPTWSKDSESEHSKMSEQSKMRSSSRGSRDAKSKSKSPSWSKDSESEQSRSEQSKSVEVKKTEEVQVESRSSSEMEEGELEPEPMPETEPEKDPNAAPKNEGHTSIPLEADEKEIQTERQLNVTDTTTHEIPEALNKEEAKPEEETESAEQNVEKDEKLPDIKNDPTDQVHDTENEIETSVHNDNKAGESLKVEITCEGETKEGAEQEKSLLHEEEHKQENGADLETRADSDKPEPNKDVSTENEVLKTDGEMTTETVTNNVKDKGKSVSVTPTDVVHPSEDGLWNDRGPRDLTTYSGDAMEGPSTRGFELFSRYPVRKAEKTDQSSLSKHKDESLSMEDLDLSLSLPNVLLPIGANENTPAPESPSQARSVQSLSTFRTNSEGFTASMSFSGSQSFYHNPSCSLTQNSIDFEQSVHSRPLFQGIDQVSHGGWQGQSQTDPKQKEIPYCQGTLINGSGTSCQSQATWGILDGQAVKGQPSRVVEGQPSRVLESSSKMASGLDRQLSFHKQLSGQSRRHDDVRSPSQSVGSHDIGSSYSFDKKREMRDRSNGSLYRTASHKEQEQFQMGGIEFVETIIAKIVSEPVPAMAKKFHEMAGQTSSCLKESIREIMLNADKRGQILAFQKVLQNRSDITLEVLLKAHRVQLEILVALKTGLTNFIQLDNSISSTDLAEIFLNLRCRNLLCRSQLPVDECDCKVCAQRSGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGHSATGVQGVTEMQFHCIACDHASEMFGFVKEVFLNFAKDWSVEALRKELEYVKRIFSASKDMRGRQLHEVADQMLLRLANKSKLQEVYSHIMSFLNDGDSPKLALTQNFPGKEQIKEKNAVAEPSHEAAWMKSIYSEKTPVLERPANILSSFDQNDKRTPPQELQTNVHKDYGFDEFESIVKIKLAEAKMFQTRADDARREAEGLKRIALAKNEKIEEEYVSRLSKLRLAETEEMRKQKFEEHQALERAHLEYFNMKMRMEADIKDLLLKMEATKRSLAM 1209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0186 1209 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1207 IPR004082 -
Lele30g0186 1209 MobiDBLite consensus disorder prediction 118 140 - -
Lele30g0186 1209 MobiDBLite consensus disorder prediction 688 739 - -
Lele30g0186 1209 MobiDBLite consensus disorder prediction 715 733 - -
Lele30g0186 1209 MobiDBLite consensus disorder prediction 56 97 - -
Lele30g0186 1209 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 824 839 IPR004082 -
Lele30g0186 1209 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 770 792 IPR004082 -
Lele30g0186 1209 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 850 871 IPR004082 -
Lele30g0186 1209 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 969 988 IPR004082 -
Lele30g0186 1209 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 809 824 IPR004082 -
Lele30g0186 1209 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 896 916 IPR004082 -
Lele30g0186 1209 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1104 1124 IPR004082 -
Lele30g0186 1209 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1143 1165 IPR004082 -
Lele30g0186 1209 Coils Coil 1128 1148 - -
Lele30g0186 1209 Pfam Coiled-coil region of Oberon 1083 1197 IPR032535 -
Lele30g0186 1209 Pfam PHD - plant homeodomain finger protein 859 982 IPR032881 -
Lele30g0186 1209 MobiDBLite consensus disorder prediction 310 429 - -
Lele30g0186 1209 MobiDBLite consensus disorder prediction 533 552 - -
Lele30g0186 1209 MobiDBLite consensus disorder prediction 284 298 - -
Lele30g0186 1209 MobiDBLite consensus disorder prediction 656 676 - -
Lele30g0186 1209 Coils Coil 1186 1206 - -
Lele30g0186 1209 Coils Coil 1158 1178 - -
Lele30g0186 1209 MobiDBLite consensus disorder prediction 148 256 - -
Lele30g0186 1209 MobiDBLite consensus disorder prediction 1 16 - -
Lele30g0186 1209 MobiDBLite consensus disorder prediction 1 491 - -
Lele30g0186 1209 MobiDBLite consensus disorder prediction 18 36 - -
Lele30g0186 1209 MobiDBLite consensus disorder prediction 430 447 - -
Lele30g0186 1209 CDD PHD_OBE1_like 889 948 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0186 Lele-ChrLele30 1864891 1869541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0186 859 1007 PHD Gene Family AT5G57380 26.846 3.44e-11 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0186 30 1864891 1869541 Lele31g0207 31 2027068 2031646 hybridization
Lele30g0186 30 1864891 1869541 Lele32g1204 32 13023774 13028429 hybridization