Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0184 ATGTGCCCTGTTTGTGTTGCTACTATAAGCAAAATGACGGGATATGGGGAACCTCCACAGGAAGTGAGTAATCCCCCTAAAGTTGACTCAGAGGTTGAAATCCTCCACGAGAATGTTACAAAACAAATAATTAAGGAAGGTCATGGTCAGAAGCCTACCAAATATTCAACATGCTTTTTTCATTACAGGGCATGGACAGAAAGCTCACAGCACAAGTTTGAAGACACATGGGATGAGCAACGACCCATTGAAATGATATTAGGAAAAGAAAAGAAAGAAATGACTGGCTTGGCTATTGGTGTGGCTAGCATGAAAGCTGGAGAGCGTGCCTTACTGCGCGTGGGCTGGGAACTAGGATATGGAAAGGATGGCAGCTTCTCTTTTCCAAATGTTCCACCTATGGCAGATTTAGTTTATGAAGTTGAGCTCATAGGCTTTGATGAAACAAAAGAAGGGAAACCTCGCAGTGATATGACTGTTGAGGAAAGGATTGGTGCGGCTGATCGTAGAAAGATGGATGGAAATGCTTTGTTTAAAGAGGAGAAATTGGAGGAGGCCATGCAACAGTATGAAATGGCTATCGCATATATGGGAGATGACTTCATGTTCCAGCTGTTTGGGAAGTATAGAGATATGGCTTTGGCTGTTAAGAATCCTTGCCACCTTAACATGGCTGCATGTCTTATTAAGCTGAACCGTTATGACGAAGCCATAGGACAATGTAGCCTTGTATTGAGTGAGGATGAAAACAATGTGAAGGCATTATTTAGACGAGGTAAGGCTAGGGCAGCCCTAGGCCAAACAGATGCTGCCAGGGAGGATTTTCTGAAAGCAAAGAAGCATGCCCCAGAAGATAAAGCAATAGCAAAAGAATTGAGATTGCTTGCAGAACACGACAAGGCTCTTTATCAAAAGCAAAAAGAGATATACAAAGGAATGTTTGGACCAAGGCCTGAACCCAAGCAAAATAATTTTCTGATTCTTATTTGGCAGGGGTTGCTGGCACTATTTCATCGGCTCATTATGTTATTCAAGCGTGAAAGGCAAAAATCTGACTAA 1059 0.4249 MCPVCVATISKMTGYGEPPQEVSNPPKVDSEVEILHENVTKQIIKEGHGQKPTKYSTCFFHYRAWTESSQHKFEDTWDEQRPIEMILGKEKKEMTGLAIGVASMKAGERALLRVGWELGYGKDGSFSFPNVPPMADLVYEVELIGFDETKEGKPRSDMTVEERIGAADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLNRYDEAIGQCSLVLSEDENNVKALFRRGKARAALGQTDAAREDFLKAKKHAPEDKAIAKELRLLAEHDKALYQKQKEIYKGMFGPRPEPKQNNFLILIWQGLLALFHRLIMLFKRERQKSD 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0184 352 SUPERFAMILY FKBP-like 12 146 - -
Lele30g0184 352 SMART tpr_5 252 285 IPR019734 GO:0005515
Lele30g0184 352 SMART tpr_5 218 251 IPR019734 GO:0005515
Lele30g0184 352 SMART tpr_5 167 200 IPR019734 GO:0005515
Lele30g0184 352 Gene3D - 23 148 IPR046357 GO:0003755
Lele30g0184 352 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 82 322 IPR039663 -
Lele30g0184 352 ProSiteProfiles TPR repeat profile. 252 285 IPR019734 GO:0005515
Lele30g0184 352 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 55 147 IPR001179 GO:0003755
Lele30g0184 352 SUPERFAMILY TPR-like 159 312 IPR011990 GO:0005515
Lele30g0184 352 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 144 IPR001179 GO:0003755
Lele30g0184 352 Gene3D Tetratricopeptide repeat domain 149 280 IPR011990 GO:0005515
Lele30g0184 352 FunFam Peptidylprolyl isomerase 152 280 - -
Lele30g0184 352 Pfam Tetratricopeptide repeat 253 283 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0184 Lele-ChrLele30 1846187 1849794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0184 39 320 Calmodulin-binding Proteins AT5G48570 33.110 1.17e-30 120
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0184 30 1846187 1849794 Lele31g0205 31 2014160 2018024 hybridization
Lele30g0184 30 1846187 1849794 Lele32g1206 32 13039425 13043305 hybridization