Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0177 ATGTATGATTCTACGAAGCCACATCACTGGCTCGCTGGTAATTTCACTCCTGTTCCGGACGAGACGCCTCCCACTAAGCATCTCCCAGTTCAAGGTTACCTCCCGGATTGTTTAAATGGAGAGTTTGTTAGGGTGGGACCTAATCCTAAGTTTGCTCCTGTGGCTGGATATCACTGGTTTGACGGAGATGGAATGATCCATGGCTTGCGTATCAAAGATGGAAAAGCAACATATGTTTCCCGATTTGTGAAAACGTCTCGTCTTAAACAAGAAGAATATTTTGGAGCTGCTAAATTTATGAAGATTGGAGATCTTAAAGGTTTTTTTGGACTTATAATGGTTAACATGCAAATGCTAAGGGCTAAATTGAAAGTACTAGATATGTCTTATGGGAATGGAACAGCTAACACAGCTCTTGTATATCACCATGGGAAGCTTCTAGCACTCTCTGAAGCAGATAAGCCTTATGCCATTAAAGTTTTTGAAGATGGGGATTTGCAAACTCTTGGCCTACTGGATTATGACAAGAGATTGAACCATTCCTTTACTGCTCATCCAAAAGTTGACCCGTTTACTGATGAGATGTTCACATTTGGCTATTCACATACGCCACCATATATAACTTACAGAGTAATCTCAAAGGACGGATTTATGCATGATCCTGTACCTATAACAATATCAGAGCCCATCATGATGCATGATTTCGCCATCACAGAGAATTATGCAATATTTATGGATCTTCCTTTGCATTTTAGACCAAAGGAAATGGTGAAGGAGAAAAAAATGATATTCTCGTTTGATTCAACCAAAAAAGCTCGTTTTGGTGTACTGCCTCGATATGCTAAGAATGAGATGCAAATTAGATGGTTTGAGCTTCCAAACTGCTTCATATTTCACAATGCTAATGCTTGGGAGGAGGATGAGGAGGTTGTTTTGATTACCTGCCGTCTTCAGAATCCAGATCTGGACATGGTCGGTGGTGGTGTCAAGGAAAAGCTTGATAACTTTGCAAATGAGCTGTATGAAATGAGATTCAACATGAAAACTGGTCTAGCTTCACAGAGGAAACTATCAGCATCTGCTGTAGATTTTCCTAGAGTAAACGAAAGCTATACTGGCAGGAAGCAGCGATACGTTTATGGAACCATATTAGACAGCATTGCAAAAGTCACAGGTATTATCAAATTTGATTTGCACGCTGAACCAGATTCTGGGAAAACAAAGCTTGAAGTTGGAGGAAACATTCTGGGTATCTATGACTTGGGGCCAGGAAGATTTGGTTCTGAGGCTATTTATGTCCCTCGTGTGCCTGGCACCAACTCCGAGGAAGATGATGGCTACTTGATATTTTTTGTGCACGACGAGAATACAGGAAAATCAGCAGTGCACGTCATCGATGCAAAGACAATGCCAGCTGATCCTGTTGCAGTTGTTGAATTGCCACATAGAGTTCCATATGGTTTCCATGCATTCTTTGTGACAGAGGAACAACTGCAAGCACAGGCAAAACTCTGA 1515 0.4125 MYDSTKPHHWLAGNFTPVPDETPPTKHLPVQGYLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVKTSRLKQEEYFGAAKFMKIGDLKGFFGLIMVNMQMLRAKLKVLDMSYGNGTANTALVYHHGKLLALSEADKPYAIKVFEDGDLQTLGLLDYDKRLNHSFTAHPKVDPFTDEMFTFGYSHTPPYITYRVISKDGFMHDPVPITISEPIMMHDFAITENYAIFMDLPLHFRPKEMVKEKKMIFSFDSTKKARFGVLPRYAKNEMQIRWFELPNCFIFHNANAWEEDEEVVLITCRLQNPDLDMVGGGVKEKLDNFANELYEMRFNMKTGLASQRKLSASAVDFPRVNESYTGRKQRYVYGTILDSIAKVTGIIKFDLHAEPDSGKTKLEVGGNILGIYDLGPGRFGSEAIYVPRVPGTNSEEDDGYLIFFVHDENTGKSAVHVIDAKTMPADPVAVVELPHRVPYGFHAFFVTEEQLQAQAKL 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0177 504 Pfam Retinal pigment epithelial membrane protein 15 493 IPR004294 GO:0016702
Lele30g0177 504 PANTHER BETA-CAROTENE DIOXYGENASE 14 495 IPR004294 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0177 Lele-ChrLele30 1787049 1795073 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0177 30 1787049 1795073 Lele31g0196 31 1933776 1941325 hybridization
Lele30g0177 30 1787049 1795073 Lele32g1214 32 13099296 13106955 hybridization