Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0175 ATGGGTCTCTTTTCAATTTCCGGGGAAAACTTGGGAAGGATGCCAGGAAAACCTGATGTGGAAGATAGGAGGTATGAAGGTGGTGGAAGGCAGATGCAGCTTCAATCAGGATTTTACTCTCAGCCATGGTGGCTTGGTGTAGAGGAAAATGCCTCTAAATCATCTTCATCAGTATTGCAGATAAATGGTTCAGCCATGAATTCACCAGCTGCTAATGAAGGAGCAGATAAACTTGATTTTCATAAGCAAACACGGCCTATGGTTTCACCTTCACTTTCTGCAGTTGGTGGGAATGTCAACAAAGAGCACCAAAACAACAAATATGCTATGTCCTCTTCACCACATGCCATGGGCAAACACCTCAGTTCAAATTCCCAAGCCGAACTTGTCGGTCATTCGATTGTTTTAACCTCTTACCCTTACTCAGATGCACAGTATGCTGGAATCTTGACATCTCATGGGCCTCAAAATATGATAAATCCTCAGTTGTATGGAATGCACTATGCTAGAATGCCTTTGCCACTTGAGATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATCTTAAGGCGAAGGCAGTCGCGGGCTAAGGCTGAGCTTGAAAGGAAAGTTATTAAAGTTAGAAAGGAGGGCAAGAGGGTGTGGGGGTCGCTTTCTGAATACGAAGAAGCTTGA 687 0.441 MGLFSISGENLGRMPGKPDVEDRRYEGGGRQMQLQSGFYSQPWWLGVEENASKSSSSVLQINGSAMNSPAANEGADKLDFHKQTRPMVSPSLSAVGGNVNKEHQNNKYAMSSSPHAMGKHLSSNSQAELVGHSIVLTSYPYSDAQYAGILTSHGPQNMINPQLYGMHYARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELERKVIKVRKEGKRVWGSLSEYEEA 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0175 228 SMART cbf3 177 228 IPR001289 GO:0003700|GO:0006355
Lele30g0175 228 Gene3D - 178 225 - -
Lele30g0175 228 ProSiteProfiles NF-YA/HAP2 family profile. 178 228 IPR001289 GO:0003700|GO:0006355
Lele30g0175 228 Coils Coil 194 214 - -
Lele30g0175 228 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 61 213 IPR001289 GO:0003700|GO:0006355
Lele30g0175 228 Coils Coil 228 228 - -
Lele30g0175 228 MobiDBLite consensus disorder prediction 1 25 - -
Lele30g0175 228 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 180 214 IPR001289 GO:0003700|GO:0006355
Lele30g0175 228 ProSitePatterns NF-YA/HAP2 subunit signature. 183 203 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0175 Lele-ChrLele30 1782052 1785315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0175 35 213 CCAAT-HAP2 Transcription Factor Family AT5G12840 36.598 3.47e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele30g0175 CBFB_NFYA 2.1e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0175 30 1782052 1785315 Lele31g0195 31 1926849 1931395 hybridization
Lele30g0175 30 1782052 1785315 Lele32g1215 32 13109032 13112551 hybridization