Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0169 ATGAAAAAGCTAATTGTTCATACAGAAGATTCATTTTCCAGCTTACTGGAACTTGCTGCTAACAATGATGTTGGAGGTTTTAAGCTACTGCTAGATAGGGATGTTTCTTCAATAAATGAAGTTGGGATTTGGTATTGTCGCCAATTTGGGTCAAAACAAATTATTCTTGACAATAGAACTCCATTAATGGTTGCTGCAACCTATGGTAGTATTGATGTTCTTAAGCTTATACTGTCTTATCCAGAGGCCAATGTTAATTTCACTTGTGGGATAAGCAAGTGTACTGCCCTTCACTGTGCTGCTTCAGGTGGATCTAATAATGCGGTTGATGTTGTGAAACTTCTTTTAGAAGCTGATGCTGATCTTAGTTGCAAGGATGCTAATGGGAATCGTCCTTTTGATGTTGTTGTTGTTCATCCGAAGCTGCAAGTCATGAGAGCAGTACTGGAAGAACTTCTTTCTGATAGTGCGTCTCATGACTCCACTGGTGACTGCTCTATTCCAGTGCCTGTTAATTCATCAAATCCTGGTTTACCTGCCCATTTATTTTCTCCCGAGAATGGATTACCGTCCTCTCCTTCAGGCTCACCTTCTTCTCCAGTGGCCTCAAAGTTCCCTGATACCACTGTTAGCTCTACCTCGGAGAAGAAAGAGTATCCAATTGATCCATCACTTCCTGACATAAAAAACAGCATTTATGCAACGGATGAGTTTCGCATGTTCTCATTCAAGGTTCGTCCTTGCTCCCGTGCATACTCTCATGATTGGACCGAGTGTCCTTTTGTTCATCCAGGAGAGAATGCTCGTAGGAGGGACCCCAGGAAATTCCATTACAGCTGTGTGCCTTGCCCTGATTTTCAGAAGGGGGCTTGTAGGCGAGGGGATATGTGTGAATATGCACATGGGGTATTTGAATGCTGGCTACACCCTGCTCAGTATCGCACTCGACTCTGCAAAGATGGTACAAATTGTAACAGAAGGGTGTGTTTTTTTGCTCACACTGCAGAAGAGTTGCGTCCACTTTATGTGTCCACTGGATCTGCTTTCCCTTCTCCACGAGCGTCTGCCTCTTCTCCCAATGTCATGGACATGGCTGCTGCAATGAACCTGTTGCCTGGTTCTCTTTCATCAGTGTCTTCCATGTCCCCATCTCACTTTACCCAGCCGATGTCTCCATCTGGTAATGGGATCTCACACTCATCTGCAGCCTGGCCACAGCCCAATGTGCCAGCCCTTCATCTTCCAGGAAGTAATCTTCAATCTAGTCGCTTGAGATCTTCTCTTAGTGCTCGTGACATTCCACCACAAGACTTGAACATGTTGCCAGAGTTTGATGGCCAGCAACACCTCTTGAATGATCTGGGCTGTTTCTCACAGCCCTGTCCTGGTGCTGTTGCTTTGAACCGATCTGGTCGGTCCAAGACACTAACTCCATCTAATCTTGAAGAGCTATTTTCCAATGAAATTTCATCTCCTCGGTATTCAGATCCAGCAGCGGCTTCTGTTTTTTCTCCCACACACAAATCCGCTGTTCTCAATCAGTTTCAACAGATTCAAAGCATGCTATCACCCATAAATACAAATGTTTTGTCTCCTAAGAATGCTGAGCATCCTCTATTGCAGGCTCCATTTGGTGTGTCTTCTCCTGGAAGGATGTCACCCAGAAGTGTGGATCCAATGTCTCCTATGAGCTCTCGGTTATCTCCATTTTCTCAGCGTGAGAAACATCAGCAGCAACAGCTGCGAAGTCTTAGTTCAAGGGAACTTGGTTCCAAAATTCCTGCTTCAGTTGTTGGTTCTCCTGGAAACTCATGGTCTAATTGGGGATCTCCTACTGGGAAAGTTGATTGGTCAATGAATGGAGATGAATTGGGTCGATTGCGAAAATTGTCCTCATTTGAGCATGGGAACTGTGGGGAAGAGCCTGATCTATCTTGGGTTCAGTCCCTTGTCAAGGAATCCCCACCTGAGATGATGAAGGAGAAGCTGGCAGCTTCTGGTCCCATGGCATCTGCGGAAAAACTGAATTCAATATCTCAGGTTGTATCCGTTGATAATTCTATGGCAGGAGCTTGGCTTGAGCAAATGCAGCTGGATCAGCTTGCTGTTTGA 2112 0.4517 MKKLIVHTEDSFSSLLELAANNDVGGFKLLLDRDVSSINEVGIWYCRQFGSKQIILDNRTPLMVAATYGSIDVLKLILSYPEANVNFTCGISKCTALHCAASGGSNNAVDVVKLLLEADADLSCKDANGNRPFDVVVVHPKLQVMRAVLEELLSDSASHDSTGDCSIPVPVNSSNPGLPAHLFSPENGLPSSPSGSPSSPVASKFPDTTVSSTSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFQKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCNRRVCFFAHTAEELRPLYVSTGSAFPSPRASASSPNVMDMAAAMNLLPGSLSSVSSMSPSHFTQPMSPSGNGISHSSAAWPQPNVPALHLPGSNLQSSRLRSSLSARDIPPQDLNMLPEFDGQQHLLNDLGCFSQPCPGAVALNRSGRSKTLTPSNLEELFSNEISSPRYSDPAAASVFSPTHKSAVLNQFQQIQSMLSPINTNVLSPKNAEHPLLQAPFGVSSPGRMSPRSVDPMSPMSSRLSPFSQREKHQQQQLRSLSSRELGSKIPASVVGSPGNSWSNWGSPTGKVDWSMNGDELGRLRKLSSFEHGNCGEEPDLSWVQSLVKESPPEMMKEKLAASGPMASAEKLNSISQVVSVDNSMAGAWLEQMQLDQLAV 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0169 703 MobiDBLite consensus disorder prediction 381 404 - -
Lele30g0169 703 ProSiteProfiles Zinc finger C3H1-type profile. 282 304 IPR000571 GO:0046872
Lele30g0169 703 SMART c3hfinal6 312 335 IPR000571 GO:0046872
Lele30g0169 703 SMART c3hfinal6 277 303 IPR000571 GO:0046872
Lele30g0169 703 Gene3D - 277 340 - -
Lele30g0169 703 ProSiteProfiles Ankyrin repeat profile. 57 79 IPR002110 GO:0005515
Lele30g0169 703 MobiDBLite consensus disorder prediction 544 605 - -
Lele30g0169 703 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Lele30g0169 703 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Lele30g0169 703 MobiDBLite consensus disorder prediction 176 222 - -
Lele30g0169 703 Pfam Ankyrin repeats (3 copies) 18 126 IPR002110 GO:0005515
Lele30g0169 703 MobiDBLite consensus disorder prediction 187 218 - -
Lele30g0169 703 FunFam Zinc finger CCCH domain-containing protein 66 235 303 - -
Lele30g0169 703 Gene3D - 2 174 IPR036770 -
Lele30g0169 703 MobiDBLite consensus disorder prediction 558 590 - -
Lele30g0169 703 ProSiteProfiles Ankyrin repeat region circular profile. 57 79 - -
Lele30g0169 703 SUPERFAMILY Ankyrin repeat 10 163 IPR036770 -
Lele30g0169 703 SMART ANK_2a 57 87 IPR002110 GO:0005515
Lele30g0169 703 SMART ANK_2a 128 161 IPR002110 GO:0005515
Lele30g0169 703 SMART ANK_2a 10 40 IPR002110 GO:0005515
Lele30g0169 703 SMART ANK_2a 92 124 IPR002110 GO:0005515
Lele30g0169 703 Pfam CCCH-type zinc finger 282 302 IPR041367 -
Lele30g0169 703 PANTHER UNKEMPT FAMILY MEMBER 17 654 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0169 Lele-ChrLele30 1721260 1723371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0169 9 700 C2H2 Transcription Factor Family AT5G12850 55.430 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele30g0169 Ank_2 4.9e-10 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele30g0169 30 1721260 1723371 Lele31g0189 31 1864062 1866266 hybridization
Lele30g0169 30 1721260 1723371 Lele32g1220 32 13166309 13168414 hybridization