Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele30g0158 ATGGCAGATCCTCAGTCTTGGTTCAACTTCATCCCTCTTCTTCATCCTCCTCATCACTGCTCTTCCTTTACTGCTACTACTTCTCATCAATCCAACGCCTGTAATAATTCCTTATACCCTCTTCATCATCATGCTCAGTACTCTAATCATAATCACTGCACATCATCATCAGCATCATCTTCCATTATTCAATACCAAAGCTCTTCGGCTAGTTCCTCCTCCACTTTATGCCATCATCCTCCAAATTCCCCTCCTCTCAAAGAAGCCCTGCCTCTCATCAACAATTTAAGCCTCACAACATCAAGTGAACCCTCAAAAAGAGCCCTAGAAGGGGAAGATGAAGAAAAGAATGAGAGAATGGAGAAAGAATATGAAGAAGATGACGACGAAGATGATGACGATAGAGAAACTGTGACTGTAGTCCTAGGAATAGGGCTTCCTACTAGTATGAACACTTCTTCTTTTTCTTCTTCTTCTTCTTCAAGCAGGCTGCAGATCTCAAATTCTGTTGAAATGGCTGAAAAAGGGGAACTTGGTTTGGTTTCTGGATACCCTTTGGAGAGATTAAACAAGGGTCAGTATTGGATTCCAACCCCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCTTGCCCTCTATGCTTAAAGACTTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCACAATACAGAAGAGGAGCAGATTCTCTAAAAGGGACACAACCAACGGGAATGCTAAGGCTACCATGTTACTGTTGTGCACCAGATTGCAAGCACAACATTGAGCATCCACGAGCCAGGCCTCTGAAGGACTTCAGGACTCTGCAGATTCACTACAAGAGGAAGCATGGAATCAAACCCTACATGTGCCGGAAATGCGGCAAGCCCTTCGCAGTCAAAGGCGACTGGAGGACTCACGAAAAGAACTGCGGCAAGCTCTGGTATTGTCTTTGTGGATCTGACTTTAAACACAAAAGGTCTCTTAAAGATCACGTCAAGGCCTTTGGCCATGGCCATGGCCATGCAGATTCTAATTGCTTGCATAATAATAATGAAGACGACGAACCAGCTTCTGAGATTGAACAAGATGGTGATAACTCCTCCATGTGA 1125 0.4373 MADPQSWFNFIPLLHPPHHCSSFTATTSHQSNACNNSLYPLHHHAQYSNHNHCTSSSASSSIIQYQSSSASSSSTLCHHPPNSPPLKEALPLINNLSLTTSSEPSKRALEGEDEEKNERMEKEYEEDDDEDDDDRETVTVVLGIGLPTSMNTSSFSSSSSSSRLQISNSVEMAEKGELGLVSGYPLERLNKGQYWIPTPSQILIGPTQFSCPLCLKTFNRYNNLQMHMWGHGSQYRRGADSLKGTQPTGMLRLPCYCCAPDCKHNIEHPRARPLKDFRTLQIHYKRKHGIKPYMCRKCGKPFAVKGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHVKAFGHGHGHADSNCLHNNNEDDEPASEIEQDGDNSSM 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele30g0158 374 Coils Coil 106 130 - -
Lele30g0158 374 MobiDBLite consensus disorder prediction 119 135 - -
Lele30g0158 374 ProSitePatterns Zinc finger C2H2 type domain signature. 211 231 IPR013087 -
Lele30g0158 374 ProSiteProfiles Zinc finger C2H2 type domain profile. 209 236 IPR013087 -
Lele30g0158 374 Gene3D Classic Zinc Finger 250 342 - -
Lele30g0158 374 SUPERFAMILY beta-beta-alpha zinc fingers 277 313 IPR036236 -
Lele30g0158 374 SUPERFAMILY beta-beta-alpha zinc fingers 203 231 IPR036236 -
Lele30g0158 374 SMART c2h2final6 293 313 IPR013087 -
Lele30g0158 374 SMART c2h2final6 209 231 IPR013087 -
Lele30g0158 374 SMART c2h2final6 319 342 IPR013087 -
Lele30g0158 374 MobiDBLite consensus disorder prediction 351 374 - -
Lele30g0158 374 PANTHER ZINC FINGER PROTEIN WIP2 46 370 IPR043584 GO:0003700|GO:0010468
Lele30g0158 374 MobiDBLite consensus disorder prediction 97 135 - -
Lele30g0158 374 Gene3D Classic Zinc Finger 208 231 - -
Lele30g0158 374 FunFam Zinc finger protein WIP2 262 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele30g0158 Lele-ChrLele30 1558650 1561873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele30g0158 171 374 C2H2 Transcription Factor Family AT3G57670 75.610 1.43e-116 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele30g0158 None None None